Dear Sir or Madam,
I am installing a galaxy server on CentOS with UCSC Genome Browser mirror site.
The mirror site works well. I installed the galaxy in the same server.
Now my question is: how to set up httpd.conf file so I can access both
websites(UCSC Genome Browser, and Galaxy) remotely?
Hi Nate.
I am ok now.
The code I copied from wiki was using galaxy_dist, while my folder name is
galaxy-dist.
After I changed the path in the code, the problem solved.
Best,
Huayan
On 13 Feb, 2012, at 11:40 AM, Huayan Gao wrote:
Hi Nate,
I removed the proxy section in httpd file
Good point, Nate! I will move galaxy out of my documentroot then.
Best,
Huayan
On Tue, Feb 14, 2012 at 1:21 AM, Nate Coraor n...@bx.psu.edu wrote:
On Feb 13, 2012, at 3:08 AM, Huayan Gao wrote:
Hi Nate.
I am ok now.
The code I copied from wiki was using galaxy_dist, while my folder name
Hi Nate,
I got a silly question for you. My galaxy is running now but I'd like
to customize it.
I've changed the welcome.html page but the galaxy mirror site is
showing the old one. Do I need to change some other files or other
configurations?
Also, I add lable in tool_conf.xml file but it does
. I've tried different ways
but no luck.
Best,
Huayan
On 14 Feb, 2012, at 1:21 AM, Nate Coraor wrote:
On Feb 13, 2012, at 3:08 AM, Huayan Gao wrote:
Hi Nate.
I am ok now.
The code I copied from wiki was using galaxy_dist, while my folder name is
galaxy-dist.
After I changed
galaxy-dist/run.sh
I could not figure it out what is wrong. Any suggestions?
Best,
Huayan
On 15 Mar, 2012, at 5:49 AM, Nate Coraor wrote:
On Mar 12, 2012, at 11:42 PM, Huayan Gao wrote:
Dear Nate,
I have a follow up question for you.
If I move galaxy out of my DocumentRoot /var
Dear Nate,
Thanks for checking. No, it is still not working. I tried all possible ways to
fix it but still not working.
Could it possible to send me your httpd.conf file for reference?
Best,
Huayan
On 16 May, 2012, at 3:57 AM, Nate Coraor wrote:
On Mar 14, 2012, at 9:16 PM, Huayan Gao
Hi Nate,
Thanks for helping. I've tried this part already but it is still not working.
Still scratching my head here...
Best,
Huayan
On 18 May, 2012, at 9:41 PM, Nate Coraor wrote:
On May 18, 2012, at 2:37 AM, Huayan Gao wrote:
Dear Nate,
Thanks for checking. No, it is still
, at 1:37 AM, Huayan Gao wrote:
Dear Nate,
Thanks for checking. No, it is still not working. I tried all possible ways
to fix it but still not working.
Could it possible to send me your httpd.conf file for reference?
Best,
Huayan
Huayan,
The permission denied error might
Dear Nate,
I am writing a tool of my own. I have a question about the default input files.
I'd like to include some test files for my tool so anyone who is using the tool
can run the tool with my default files or the files they upload. How can I set
it up or where should I put the default
Hi there,
I'm interested in the specifics of your Penn State setup. Can you send it
to me?
Thanks,
Huayan
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There's a lot more.
Dave C
On Thu, Nov 29, 2012 at 11:21 PM, Huayan Gao huayan...@gmail.com wrote:
Hi there,
I'm interested in the specifics of your Penn State setup. Can
Hi,
I am trying to add a tool into Galaxy. So far everything is ok except that
I need to restart the server to make the tool showing up in the tool panel.
So my question is that how to refresh the tool panel without restarting the
server?
After I install a tool from toolshed, I can see the tool
anything to
the server.
On Thu, Dec 13, 2012 at 12:10 PM, Huayan Gao huayan...@gmail.com wrote:
Dear all,
I just want to follow up with this question(see email below). I am afraid
that it is lost in the traffic.
Thanks,
Huayan
On Fri, Dec 7, 2012 at 12:48 PM, Huayan Gao huayan
Hi,
First it started with the error message: self.check_version_conflict(). So
I use the virtualenv as instructed in wiki. But I got a new error: ImportError:
No module named rpy/numpy... I will not have this importerror if I dont
use the virtualenv. How to solve this problem?
Thanks,
Huayan
Hi,
I am trying to create a page in Galaxy and want to add some pictures/
screenshots. So how could I do this? I clicked the image button but it
needs a URL not the path from my local computer.
Thanks,
Huayan
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Thanks Bjoern! I figured it out too.
I put the pictures in the static/images/Pages folder, then use them in the
page. The main idea is to find a place with valid URL to store the pictures
first. :-)
Best,
Huayan
On Tue, Mar 12, 2013 at 5:41 PM, Björn Grüning
Hi,
I am trying to connect my local database/webpages to my local galaxy
server. But I have a hard to implement send output to galaxy function.
Right now I have a sending page to send a form to galaxy and it looks like
everything goes well. From the variable json_params(data_source.py), I can
see
Hi,
I am doing a data transferring interface in galaxy. I want to accomplish
two things. First, when user enters a number, the interface will show some
related information or search results (eg, related files) by this unique
number. Then user can select the files they wanted to put into galaxy
Hi,
I wanted to use bowtie2 and tophat2 locally. I remembered you have
instructions about how to set up the library here, but it is not accessible
any more.
https://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup
Can you direct me to the right page or send me the documents please?
Thanks,
PM, Huayan Gao huayan...@gmail.com wrote:
Hi,
I wanted to use bowtie2 and tophat2 locally. I remembered you have
instructions about how to set up the library here, but it is not accessible
any more.
https://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup
Can you direct me to the right page
Hi Martin,
Actually I want a NGS Toolbox Beta tool panel exactly like the
usegalaxy.org. How can I achieve this?
I found myself looking for the tools and put them to tool_conf.xml which is
very tedious.
Is there a better way to do it?
Best,
Huayan
On Thu, Mar 20, 2014 at 11:43 AM, Huayan Gao
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