Re: [galaxy-dev] Why does my trackster complain about not being able to display BED files?

2013-08-21 Thread sam guerler
Hi Anthonius, Do you have the BEDTools installed and its directory added to your PATH environment variable? Trackster uses compressed file formats to reduce the amount of data transfers. I hope this helps, Sam On Wed, Aug 21, 2013 at 4:11 PM, Anthonius deBoer thondeb...@me.com wrote: Hi,

Re: [galaxy-dev] Tabular data not displaying in main panel

2013-10-02 Thread sam guerler
Hi Peter, Does the Javascript console of the browser show any error messages? Thanks, Sam On Wed, Oct 2, 2013 at 2:48 PM, Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de wrote: Hi Peter, we can confirm. Latest Galaxy stable version and its occurring randomly. I was not able to

Re: [galaxy-dev] Tabular data not displaying in main panel

2013-10-03 Thread sam guerler
restarting the browser made no difference. Also (within Galaxy) logging out and logging in made no difference. On Wed, Oct 2, 2013 at 7:56 PM, sam guerler aysam.guer...@gmail.com wrote: Hi Peter, Does the Javascript console of the browser show any error messages? Thanks, Sam Under

Re: [galaxy-dev] Tabular data not displaying in main panel

2013-10-03 Thread sam guerler
releases on galaxy-dist as well. Peter On Thu, Oct 3, 2013 at 3:12 PM, Peter Cock p.j.a.c...@googlemail.com wrote: On Thu, Oct 3, 2013 at 2:47 PM, sam guerler aysam.guer...@gmail.com wrote: Hi Peter, I cannot reproduce the type error you are observing, but that one might

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-16 Thread sam guerler
Hi Tim, Were you able to fix your problem? Thanks, Sam On Fri, Oct 4, 2013 at 1:05 PM, Nate Coraor n...@bx.psu.edu wrote: Tim, Just to be certain, if you have AJAX upload enabled, you'll see this message after you click Execute on the upload tool:

Re: [galaxy-dev] Library permission page broken

2013-11-27 Thread sam guerler
Hello David, Could you provide more details on how to reproduce this i.e. which buttons to click to get there? Thanks, Sam On Wed, Nov 27, 2013 at 11:11 AM, David Hoover hoove...@helix.nih.govwrote: After the latest update, the Manage library permissions page is broken. The Roles not

Re: [galaxy-dev] Library permission page broken

2013-11-27 Thread sam guerler
Ok, I found it. However I could not reproduce the problem with Chrome and Safari, yet. On Wed, Nov 27, 2013 at 3:27 PM, sam guerler aysam.guer...@gmail.comwrote: Hello David, Could you provide more details on how to reproduce this i.e. which buttons to click to get there? Thanks, Sam

Re: [galaxy-dev] Error when searching for tools in local instance.

2014-01-21 Thread sam guerler
Hi Ricardo, Are you using the newest version from the stable branch or from default? Thanks, Sam On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo ricky_...@neo.tamu.eduwrote: Dear All, When I go to my Galaxy Distibution I go the following place: Admin - Manage installed tool shed

Re: [galaxy-dev] Error when searching for tools in local instance.

2014-01-24 Thread sam guerler
branches now. Thank you, --Ricardo Perez - Original Message - From: sam guerler aysam.guer...@gmail.com To: Ricardo Perez ricky_...@neo.tamu.edu Cc: Galaxy-dev Galaxy-dev galaxy-dev@lists.bx.psu.edu Sent: Tuesday, January 21, 2014 3:19:07 PM Subject: Re: [galaxy-dev] Error when

Re: [galaxy-dev] Error in Galaxy Reports

2014-02-13 Thread sam guerler
Hi Nikos, Thank you so much for your report. This issue should be fixed now. Please update your revision and try again. Thanks, Sam On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos nikos.sid...@gmail.comwrote: Hi all, after the February 2014 galaxy update I'm experiencing errors in

Re: [galaxy-dev] Local Galaxy web layout

2014-02-17 Thread sam guerler
Hi Shenwiyn, This has changed recently. Please take a look at: static/scripts/galaxy.menu.js Using that file, you can add/remove/change labels and their position. It is recommended to run pack_scripts.py after changing the source file. Regards, Sam On Mon, Feb 17, 2014 at 11:33 AM,

Re: [galaxy-dev] Local Galaxy web layout

2014-02-19 Thread sam guerler
local Galaxy.As a result,would you please show me some more details about this? Regards, Shenwiyn *From:* sam guerler aysam.guer...@gmail.com *Date:* 2014-02-18 01:20 *To:* Hans-Rudolf Hotz h...@fmi.ch *CC:* shenw...@gmail.com; galaxy-dev galaxy-dev@lists.bx.psu.edu *Subject:* Re: [galaxy-dev

Re: [galaxy-dev] inserting .js file for visualization with d3.js

2014-03-17 Thread sam guerler
Hi Lionel, One option is to place your js code into the visualization framework as shown here : https://wiki.galaxyproject.org/VisualizationsRegistry Once you have activated the framework, a button will be provided to run your js code on a certain dataset file format / tool output file format.

Re: [galaxy-dev] FTP page not viewable.

2014-04-23 Thread sam guerler
Hi Tim, How exactly are you trying to view the FTP files? Are you using the Tool panel ('Get Data' 'Upload File') or the 'Choose FTP file' button in the new upload front end? Thanks, Sam On Wed, Apr 23, 2014 at 2:29 AM, Timothy Carr timothy.c...@uct.ac.zawrote: Hi All, I've discovered a

Re: [galaxy-dev] Uploading files

2014-07-09 Thread sam guerler
Hi Mathew, Does the progress bar in the Upload window show any progress? Thanks, Sam On Wed, Jul 9, 2014 at 10:27 AM, Dannon Baker dannon.ba...@gmail.com wrote: How large are the files you're attempting to upload? Another method for uploading with more reliability than web browsers would

[galaxy-dev] Send me your Visualizations

2014-07-25 Thread sam guerler
Hello everyone, We are working on a central wiki page to create an overview for all custom visualizations. This includes visualizations using the visualization framework, but also visualizations created by custom tools. Please get back to me and provide information on any visualization which is