Re: [galaxy-dev] Dynamic data library

2013-10-02 Thread Cole, Nathan (NIH/NCI) [C]
m? Thanks, Nathan -Original Message- From: Hans-Rudolf Hotz [mailto:h...@fmi.ch] Sent: Tuesday, October 01, 2013 10:11 AM To: Cole, Nathan (NIH/NCI) [C] Cc: 'galaxy-dev@lists.bx.psu.edu' Subject: Re: [galaxy-dev] Dynamic data library On 10/01/2013 03:53 PM, Cole, Nathan

Re: [galaxy-dev] Dynamic data library

2013-10-02 Thread Hans-Rudolf Hotz
ot;/> // If not, is there any method for exposing a the whole of a directory on the file system? Thanks, Nathan -Original Message- From: Hans-Rudolf Hotz [mailto:h...@fmi.ch] Sent: Tuesday, October 01, 2013 10:11 AM To: Cole, Nathan (NIH/N

Re: [galaxy-dev] Dynamic data library

2013-10-01 Thread Hans-Rudolf Hotz
ans-Rudolf Hotz [mailto:h...@fmi.ch] Sent: Tuesday, October 01, 2013 4:07 AM To: Cole, Nathan (NIH/NCI) [C] Cc: Martin Čech; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Dynamic data library Hi Nathan Do you have many tools working with those samples or just a few? If you only have a limi

Re: [galaxy-dev] Dynamic data library

2013-10-01 Thread Hans-Rudolf Hotz
Hi Nathan Do you have many tools working with those samples or just a few? If you only have a limited, predefined set of tools you might wanna consider adding the sample selection into the tool. You can use the from_file, or from_data_table options to dynamically create sample selection lis

Re: [galaxy-dev] Dynamic data library

2013-09-30 Thread Martin Čech
Hi Nathan, Dannon answered similar question few days ago: There's an import mechanism in libraries that'll allow you to simply link > to the file on disk without copy/upload. I believe the > "example_watch_folder.py" sample script (in the distribution) does just > this via the API, if you want a

[galaxy-dev] Dynamic data library

2013-09-30 Thread Cole, Nathan (NIH/NCI) [C]
Hello, we've set up a local Galaxy instance in our genotyping and next-gen sequencing lab with local Apache LDAP (AD) integration, NFS mounts to a large NAS, and cluster integration coming. Do to the high volume of samples and staff that will be using the system, I want to set up data libraries