in
the workflow.
Let me know your suggestions.
Praveen.
-Original Message-
From: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Carlos Borroto
Sent: Tuesday, March 27, 2012 12:44 AM
To: Vipin TS
Cc: Galaxy Dev
Subject: Re: [galaxy-dev] R scripts
Hi Carlos,
Currently I am in a transition period, and I didn't get much time to look
on the same, Sorry for the delay.
For getting the read count, we wrote script and which is wrapped in Deseq
main program.
regards,
--Vipin T S
On 26 March 2012 14:01, Carlos Borroto carlos.borr...@gmail.com
Thanks for the update.
I wonder if when you had the time to upload your script to the
toolshed, you could use a different name from just plain DESeq to
avoid confusion. A researcher might expect a DESeq tool to use a read
count table and not BAM files as input.
Kind regards,
Carlos
On Mon, Mar
Just set up the email alert. Thanks. Lisa
On Wed, Feb 22, 2012 at 9:27 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Lisa,
In case you aren't aware, you can set your user preferences for your account
in the tool shed to receive an email message when a new repository's first
upload occurs.
Which version of DESeq does this tool use?
Note that there are significant differences between DESeq 1.4 (the version
described in the paper) and 1.6.x (current release). The differences are
both in functionality and results.
Regards,
Chris
On 23/02/2012 02:27, Greg Von Kuster g...@bx.psu.edu
Hi Chris,
We are running DESEQ_VERSION 1.6.0 at our instance
http://galaxy.tuebingen.mpg.de/tool_runner?tool_id=deseq
thanks,
--Vipin T S
Which version of DESeq does this tool use?
Note that there are significant differences between DESeq 1.4 (the version
described in the paper) and 1.6.x
Hi Lisa,
I am going to send your question over to the galaxy-...@bx.psu.edu
mailing list so that the development community can offer feedback.
http://wiki.g2.bx.psu.edu/Support#Starting_a_technical.2C_local.2BAC8-cloud_instance.2C_or_development_thread
Th galaxy-user list is primarily for
Lisa,
In case you aren't aware, you can set your user preferences for your account in
the tool shed to receive an email message when a new repository's first upload
occurs. This would keep you from having to check the tool shed. Go to User -
Preferences - Manage your email alerts and you'll
