[galaxy-dev] UnicodeDecodeError - suggested note regarding UTF8 encoding in postgres databases

2013-09-18 Thread Guest, Simon
I've finally joined the happy throng suffering from Unicode errors. In my particular case, running the deseq tool from the main toolshed brought down my Galaxy server, and it wouldn't restart. The traceback in paster.log contained this Traceback (most recent call last): [snip] File "/hom

Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

2013-05-09 Thread Ramon Tiburski
Thank you so much Subject: Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte From: d...@bx.psu.edu Date: Thu, 9 May 2013 12:45:25 -0400 CC: galaxy-dev@lists.bx.psu.edu To: ramao_tiago_tibur...@hotmail.com Assuming you che

Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

2013-05-09 Thread Daniel Blankenberg
nce? > > Subject: Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte > 0xb9 in position 15: invalid start byte > From: d...@bx.psu.edu > Date: Thu, 9 May 2013 11:02:46 -0400 > CC: galaxy-dev@lists.bx.psu.edu > To: ramao_tiago_tibur...@hotmail.com >

Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

2013-05-09 Thread Ramon Tiburski
OK. thank you so much, but how can I update my instance? Subject: Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte From: d...@bx.psu.edu Date: Thu, 9 May 2013 11:02:46 -0400 CC: galaxy-dev@lists.bx.psu.edu To: ra

Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

2013-05-09 Thread Daniel Blankenberg
Hi Ramon, I've committed a patch to the stable branch that should resolve this issue. Please update your Galaxy instance and let us know if this has fixed it for you. Thanks for using Galaxy, Dan On May 9, 2013, at 8:40 AM, Ramon Tiburski wrote: > Hi, > > I uploaded some data and when I cl

[galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

2013-05-09 Thread Ramon Tiburski
Hi, I uploaded some data and when I click in the eye to see the data I get the following error. I don't know what can I do to fix this problem, I trying install some packges from python but didn't solve my problem. I'm starting think about my operational system, I have ubuntu 12.04 3

Re: [galaxy-dev] UnicodeDecodeError

2011-06-10 Thread Dannon Baker
Thanks for reporting this. I've attempted to reproduce the workflow related error you're seeing, but have been unable to do so. Do you know what revision your galaxy instance is running? You should not have to avoid special characters in dataset names. If you do run into this issue again, pl

[galaxy-dev] UnicodeDecodeError

2011-06-09 Thread Sarah Diehl
Hello everybody, currently I have some trouble with the following kind of error: UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 155: ordinal not in range(128) We have encountered it twice now. The first time it was related to a shared library, which could not be opened