[galaxy-dev] Error running workflow via API

2014-04-09 Thread John Eppley
The API interface is translating my parameters into python repr strings instead of actual strings. A command that should look like this: createPrimerFile.py /minilims/galaxy-data/primerTemplates/nextera.2x.primers.fasta NN NN > /slipstream/galaxy/production/data/files/020/dataset_20664.

Re: [galaxy-dev] Error running workflow via API

2014-04-09 Thread John Marmaduke Eppley
I’ve figured this one out. The tool id changed one me. Sorry for the spam. -j On Apr 9, 2014, at 4:48 PM, John Marmaduke Eppley wrote: > The API interface is translating my parameters into python repr strings > instead of actual strings. > > A command that should look like this: > createPrimer

[galaxy-dev] Error running workflow via API

2014-04-09 Thread John Marmaduke Eppley
The API interface is translating my parameters into python repr strings instead of actual strings. A command that should look like this: createPrimerFile.py /minilims/galaxy-data/primerTemplates/nextera.2x.primers.fasta NN NN > /slipstream/galaxy/production/data/files/020/dataset_20664.

Re: [galaxy-dev] error running workflow

2012-07-02 Thread Hans-Rudolf Hotz
Hi Jaap are you using 'SQLite', if so, I recommend to switch to 'PostgreSQL', see: http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server/#Switching_to_a_database_server Regards, Hans On 07/02/2012 02:26 PM, j.w.f.van_der_heij...@lumc.nl wrote: Hi all, I have added som

[galaxy-dev] error running workflow

2012-07-02 Thread J.W.F.van_der_Heijden
Hi all, I have added some tools to my local install of Galaxy. To get to my final results I have to do a lot of steps. When I try to run every step separately it turns out to work out fine. But when I try to run all steps at once with a workflow I get the following error message. Operationa