Re: [galaxy-dev] reasonable linux box specs

2013-11-16 Thread Jeremy Goecks
> Without details about your incoming data rate and size, it's very difficult > to answer this question. I suggest taking some of your data, running it on > our public server (usegalaxy.org), and seeing how long it takes. RNA-seq > tools (Tophat, Cufflinks, etc.) use 4 cores for a job, so you c

Re: [galaxy-dev] reasonable linux box specs

2013-11-15 Thread Jeremy Goecks
Without details about your incoming data rate and size, it's very difficult to answer this question. I suggest taking some of your data, running it on our public server (usegalaxy.org), and seeing how long it takes. RNA-seq tools (Tophat, Cufflinks, etc.) use 4 cores for a job, so you can estima

[galaxy-dev] reasonable linux box specs

2013-11-15 Thread Andrew Norman
Hi all I'd like to set up a local installation of Galaxy on a dedicated linux machine. I've taken a look at the Galaxy "appliance", but since I'm the only one in my lab who will be using it, it's outside my price range. I'm going to be doing RNA seq read mapping and differential expression analys