Re: [galaxy-dev] [galaxy-user] Installing new tools from the tool shed

2013-02-20 Thread Dannon Baker
It's really hard to say what's going on with those issues without more information about the particular version of galaxy (which unfortunately we'd get from `hg tip`, which won't work on your bio linux install) or proxy configuration, if any. I'm also not sure what the appropriate bio linux update

Re: [galaxy-dev] [galaxy-user] Installing new tools from the tool shed

2013-02-15 Thread Dannon Baker
It's really hard to say what's going on with those issues without more information about the particular version of galaxy (which unfortunately we'd get from `hg tip`, which won't work on your bio linux install) or proxy configuration, if any. I'm also not sure what the appropriate bio linux update

Re: [galaxy-dev] [galaxy-user] Installing new tools from the tool shed

2013-02-15 Thread David Joly
I still haven't heard back from the Bio-Linux guys regarding how to update Galaxy within Bio-Linux... In the meantime, I tried to play with the "Manage data libraries", in order to import large datasets. I modified the "library_import_dir" line in the universe_wsgi.ini. The first thing I can say i

Re: [galaxy-dev] [galaxy-user] Installing new tools from the tool shed

2013-02-13 Thread David Joly
This could be the problem, I just installed BioLinux 7 on my computer with Galaxy running out-of-the-box... However, it looks like they changed a few things, there is no .hg file and no galaxy-dist folder. Can I update outside of mercurial? 2013/2/13 Dannon Baker > How old is the galaxy you're

Re: [galaxy-dev] [galaxy-user] Installing new tools from the tool shed

2013-02-13 Thread David Joly
Ok, one more step closer (I thought closing the browser would be enough to restart galaxy, but obviously, I had to reboot the computer). But now it says: ValueError: too many values to unpack 2013/2/13 Dannon Baker > On Feb 13, 2013, at 6:16 PM, David Joly wrote: > > > Hi! > > > > Ok, I know

Re: [galaxy-dev] [galaxy-user] Installing new tools from the tool shed

2013-02-13 Thread Dannon Baker
How old is the galaxy you're running? To use the main toolshed you'll need to use a galaxy-dist release from December or later. After this point in time the interface was standardized and is backwards compatible. To update, you should be able to simply navigate to your galaxy-dist directory,

Re: [galaxy-dev] [galaxy-user] Installing new tools from the tool shed

2013-02-13 Thread Dannon Baker
On Feb 13, 2013, at 6:16 PM, David Joly wrote: > Hi! > > Ok, I know many people had the same issue, but I just can't figure what's > going on. I'm quite new about using a local instance of Galaxy and I'm trying > to figure how to install a tool from the tool shed. Reading the tutorial > (Ins