Greg Von Kuster writes:
> On Nov 9, 2012, at 12:56 AM, Derrick Lin wrote:
> > Also how does this change affect the existing shed tools like BWA that
is using tool_data_table_conf.xml?
>
> The existing shed tools will contiue to function as usual, but entries for
them will be in the tool_data_tabl
Fantastic! Thanks for all the details Greg.
Cheers,
Derrick
On Fri, Nov 9, 2012 at 10:55 PM, Greg Von Kuster wrote:
> Hi Derrick,
>
> On Nov 9, 2012, at 12:56 AM, Derrick Lin wrote:
>
> For issue 1), so I think it's safe to remove the
> tool-data/tool_data_table_conf.xml
> & tool-data/tool_da
Hi Derrick,
On Nov 9, 2012, at 12:56 AM, Derrick Lin wrote:
> For issue 1), so I think it's safe to remove the
> tool-data/tool_data_table_conf.xml &
> tool-data/tool_data_table_conf.xml.sample since they are not used?
Yes, the ~/tool-data/tool_data_table_conf.xml.sample and
~/tool-data/tool
For issue 1), so I think it's safe to remove the
tool-data/tool_data_table_conf.xml
& tool-data/tool_data_table_conf.xml.sample since they are not used?
For issue 2) if the galaxy will automatically pick up the new file
shed_tool_data_table_conf.xml
without configuring the ini file? Also how does
Thanks Greg,
Very nice to hear they are all fixed now. Will try and verify when they are
released.
Cheers,
D
On Fri, Nov 9, 2012 at 2:10 AM, Greg Von Kuster wrote:
> Hello Derrick,
>
> Your message discusses 2 separate issues:
>
> 1. When you install your meme_chip repository from the tool sh
Hello Derrick,
Your message discusses 2 separate issues:
1. When you install your meme_chip repository from the tool shed, the file
named tool_data_table_conf.xml.sample contained in the repository is copied to
the ~/tool-data directory in the local Galaxy instance. This issue has been
correc
It's actually in related to a new galaxy shed tool we developed called
meme-chip, we uploaded it to the main Tool Shed site.
We provided tool_data_table_conf.xml.sample and xxx.loc.sample along with
the tool. After the installation, the loc file has been populated
automatically, but the entry ins
