Hi Tim,
I agree the single tool_data_table_conf.xml is a problem and it would be
nice to implement functionality for multiple. I've added a Trello card for
it here: https://trello.com/c/rm2p8PpZ
As to the location file collections, I can foresee a few problems, e.g.
conflicting definitions, bad f
Hi Nate,
It's great to hear that my rearrangements for packaging Galaxy are
somewhat in line with what you are doing. My package is a bit of a
rats-nest of symlinks right now but I'll clean these up as things become
more configurable.
One thing I'm a bit stuck on is the tool_data_table_conf.xml
Hi Tim,
I have recently been working on getting Galaxy Main's configs and
server-modified files and directories out of the galaxy-dist directory, so
our goals are aligning. Not everything can be moved without some trickery
(e.g. symlinks) but most paths, including the paths to shed_*.xml are
confi
Hi,
This is mainly a message to Carlos and Eric who volunteered to get
involved with my Debian packaging, but of course any other help will
also be appreciated. If either of you can spare time now it is a good
moment to do so.
I've been working on my package stuff over the last couple of weeks a
Hi John and Carlos,
Thanks for your replies regarding my DEB packaging work. Some quick
answers to questions you raised.
>
> In response to the eggs comment in the changelog - there are upsides
> and downsides to the way Galaxy handles dependency fetching but I
> think there should at least be a
Hi Tim,
This sounds great. I'll be happy to help testing and hopefully find
some time to help packaging once it gets into Debian Med(are you
submitting all your packages there?).
One question, for apache/nginx configuration why not use something ala
phpMyAdmin which ask you if you want to preconf
This is quite awesome! Thanks for all the hard work Tim.
In response to the eggs comment in the changelog - there are upsides
and downsides to the way Galaxy handles dependency fetching but I
think there should at least be an off switch. I thought that would be
easy, but it sounds like not:
>From
