On Dec 4, 2012, at 10:52 AM, Josh Nielsen wrote:
Hello all,
I am having issues downloading HTML files from Galaxy the same as is
described in this email chain:
http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-August/010965.html
I am getting the error (13)Permission denied: xsendfile:
On 04/12/12 16:52, Josh Nielsen wrote:
I am getting the error (13)Permission denied: xsendfile: cannot open file:
/basedir/galaxy_data/database/tmp/tmp8iEccn/library_download.zip which is
indeed a basic filesystem permissions issue. The problem is that the
permissions created for that directory
Hi Nate,
Thanks for the reply. No I hadn't thought to add anything to
/etc/init.d/galaxy itself. It is a short enough script that I can paste it
below. What would I need to do to edit it with umask settings?
Also I should note, changing the umask in the PAM files actually did change
the default
Hi Paul,
Thanks for replying. Interestingly I've never dealt with filesystem ACLs
before and I didn't even know that ext3/4 systems had that feature.
Here is my output from those commands:
bash getfacl tmp8iEccn
# file: tmp8iEccn
# owner: galaxy
# group: galaxy
user::rwx
group::---
mask::rwx
On Dec 4, 2012, at 11:23 AM, Josh Nielsen wrote:
Hi Nate,
Thanks for the reply. No I hadn't thought to add anything to
/etc/init.d/galaxy itself. It is a short enough script that I can paste it
below. What would I need to do to edit it with umask settings?
Also I should note, changing
On 04/12/12 17:35, Josh Nielsen wrote:
Hi Paul,
Thanks for replying. Interestingly I've never dealt with filesystem ACLs
before and I didn't even know that ext3/4 systems had that feature.
Here is my output from those commands:
bash getfacl tmp8iEccn
# file: tmp8iEccn
# owner: galaxy
#
Great. I'll give those ideas a shot to see if it gets me anywhere.
P.S. You referenced in the email that I linked to a fix in the next release
of Galaxy. Is that out yet or still in development?
-Josh
On Tue, Dec 4, 2012 at 10:44 AM, Nate Coraor n...@bx.psu.edu wrote:
On Dec 4, 2012, at 11:23
On Dec 4, 2012, at 11:57 AM, Josh Nielsen wrote:
Great. I'll give those ideas a shot to see if it gets me anywhere.
P.S. You referenced in the email that I linked to a fix in the next release
of Galaxy. Is that out yet or still in development?
The fix was in the September 7, 2012
