Re: [galaxy-dev] This tool was disabled before the job completed. Please contact your Galaxy administrator.
Never mind, I figured it out. I deleted all instances of the job and the temp dataset. Thanks R On Apr 4, 2014, at 2:29 PM, Ravi Alla wrote: > Anyone please?? I cannot even start the galaxy server. Makes me wonder if > something in the database got messed up. > On Apr 4, 2014, at 11:16 AM, Ravi Alla wrote: > >> Hi devs, >> I deleted a tool called upload_local_file and tried to restart galaxy server >> but I keep getting the following error. Any idea how to solve this? >> >> File >> "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", >> line 39, in app_factory >> app = UniverseApplication( global_conf = global_conf, **kwargs ) >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py", line 130, in >> __init__ >> self.job_manager = manager.JobManager( self ) >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py", line >> 37, in __init__ >> self.job_handler.start() >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line >> 35, in start >> self.job_queue.start() >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line >> 78, in start >> self.__check_jobs_at_startup() >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line >> 109, in __check_jobs_at_startup >> JobWrapper( job, self ).fail( 'This tool was disabled before the job >> completed. Please contact your Galaxy administrator.' ) >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py", >> line 761, in fail >> self.app.object_store.update_from_file(dataset.dataset, create=True) >> File >> "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", >> line 349, in update_from_file >> self.create(obj, **kwargs) >> File >> "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", >> line 298, in create >> open(path, 'w').close() # Should be rb? >> IOError: [Errno 2] No such file or directory: >> '/global/scratch/galaxy/webapp/files/000/dataset_194.dat' >> >> Thanks >> Ravi > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] This tool was disabled before the job completed. Please contact your Galaxy administrator.
Anyone please?? I cannot even start the galaxy server. Makes me wonder if something in the database got messed up. On Apr 4, 2014, at 11:16 AM, Ravi Alla wrote: > Hi devs, > I deleted a tool called upload_local_file and tried to restart galaxy server > but I keep getting the following error. Any idea how to solve this? > > File > "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", > line 39, in app_factory > app = UniverseApplication( global_conf = global_conf, **kwargs ) > File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py", line 130, in > __init__ > self.job_manager = manager.JobManager( self ) > File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py", line > 37, in __init__ > self.job_handler.start() > File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line > 35, in start > self.job_queue.start() > File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line > 78, in start > self.__check_jobs_at_startup() > File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line > 109, in __check_jobs_at_startup > JobWrapper( job, self ).fail( 'This tool was disabled before the job > completed. Please contact your Galaxy administrator.' ) > File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py", line > 761, in fail > self.app.object_store.update_from_file(dataset.dataset, create=True) > File > "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line > 349, in update_from_file > self.create(obj, **kwargs) > File > "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line > 298, in create > open(path, 'w').close() # Should be rb? > IOError: [Errno 2] No such file or directory: > '/global/scratch/galaxy/webapp/files/000/dataset_194.dat' > > Thanks > Ravi ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
