Re: [galaxy-dev] submit() gets blocked when running workflows via API

2014-06-23 Thread Carlos del Ojo
Hi, Yes I found a workaround. Initially I had problems because I was using SQLite and I had lock problems that led to ugly SQLAlchemy errors. After changing to Postgres SQL I got rid of lock errors but I had same issue. So I tried to create a simple script (my workflow has 14 processes) from co

Re: [galaxy-dev] submit() gets blocked when running workflows via API

2014-06-23 Thread Gildas Le Corguille
Hi, We had this behavior when we used the default SQLite. Since we switched on MySQL, it fixed this :P Maybe a clue for you ? Gildas Le 18/06/2014 18:33, Carlos del Ojo a écrit : Hi All, I am using the API (posting to 'http://localhost:8080/api/workflows' ) and running 8 workflows in a row.

Re: [galaxy-dev] submit() gets blocked when running workflows via API

2014-06-20 Thread John Chilton
Hey Carlos, Have you made any progress on this, I have never heard of this behavior but at the same time it does not surprise tremendously either. How large is the workflow? If large - you will almost certainly want to make sure you are using a Postgres database server instead of sqlite. Likewis