Re: [galaxy-dev] Manage jobs interface error

2014-12-10 Thread C. Ch.
Hi Dannon, A 'hg pull -u' brought me up to changeset 14925:2db0fb9594d6 so I'll try later this week.I will tell you if everything went well. Thanks,Cristian Date: Tue, 9 Dec 2014 16:30:10 -0500 Subject: Re: [galaxy-dev] Manage jobs interface error From: dannon.ba...@gmail.com To:

[galaxy-dev] order of tools installed from toolshed

2014-12-10 Thread Wolfgang Maier
Dear all, I'm currently testing a software package we developed for installation from the testtoolshed. Things seem to work fine mostly, but there is one thing I don't know how to solve (if it can be solved). Our package consists of 14 individual tools, which I uploaded as 14 separate

[galaxy-dev] Repository dependency definitions broken on Test Tool Shed

2014-12-10 Thread Peter Cock
Hi all, The Repository dependency definitions link is working on the Main Tool Shed, but fails with the following exception on the Test Tool Shed: URL: http://testtoolshed.g2.bx.psu.edu/repository/browse_repository_dependencies File

Re: [galaxy-dev] order of tools installed from toolshed

2014-12-10 Thread Wolfgang Maier
Hi Peter, here's the link to the package: https://testtoolshed.g2.bx.psu.edu/view/wolma/suite_mimodd_0_1_5 It is not using a suite_config.xml file (which I hear of for the first time), but contains just a single repository_dependencies.xml file with this content: ?xml version=1.0?

Re: [galaxy-dev] Nothing being tested on Test and main Tool Shed?

2014-12-10 Thread Peter Cock
On Thu, Nov 27, 2014 at 1:58 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Hi Guys, I retitled this since the TestToolShed does seem to be running tests regularly again. However, I still have a fair number failing with the cryptic status Exception: History in error state. I guess the

Re: [galaxy-dev] order of tools installed from toolshed

2014-12-10 Thread Peter Cock
Thanks Wolfgang, I think the suite_config.xml file was originally designed a subset of the tool_conf.xml file, inserted into it at run time. I think it could hold the tools in the desired order - probably with subsections and labels too. However, I suspect this may not be used with the current

Re: [galaxy-dev] Nothing being tested on Test and main Tool Shed?

2014-12-10 Thread John Chilton
On Wed, Dec 10, 2014 at 5:46 AM, Peter Cock p.j.a.c...@googlemail.com wrote: On Thu, Nov 27, 2014 at 1:58 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Hi Guys, I retitled this since the TestToolShed does seem to be running tests regularly again. However, I still have a fair number failing

Re: [galaxy-dev] Nothing being tested on Test and main Tool Shed?

2014-12-10 Thread Peter Cock
On Wed, Dec 10, 2014 at 2:03 PM, John Chilton jmchil...@gmail.com wrote: On Wed, Dec 10, 2014 at 5:46 AM, Peter Cock p.j.a.c...@googlemail.com wrote: Hi guys, The good news is my list of failing tools has shrunk to the following, none of which seem to have been tested yet in December, stuck

Re: [galaxy-dev] order of tools installed from toolshed

2014-12-10 Thread Peter Cock
On Wed, Dec 10, 2014 at 2:08 PM, John Chilton jmchil...@gmail.com wrote: Peter - When you have previously asked about suite_config.xml I grepped around and I couldn't find any references to it, did some more greps just now and I still cannot. My best guess is that is not being used at all

[galaxy-dev] Nginx + HTTPS

2014-12-10 Thread Nicholas Kline
Hello. I am trying to configure our local production Galaxy server to always use HTTPS on nginx. When I visit http://localhost I see the main galaxy webpage where I can sign in. However, when I enter my administrator credentials and click Login, the page tries to redirect to HTTPS but then