On Wed, Dec 10, 2014 at 2:03 PM, John Chilton <jmchil...@gmail.com> wrote: > On Wed, Dec 10, 2014 at 5:46 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote: >> Hi guys, >> >> The good news is my list of failing tools has shrunk to the following, >> none of which seem to have been tested yet in December, stuck >> with "Exception: Job in error state.": >> >> https://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go >> https://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr >> https://testtoolshed.g2.bx.psu.edu/view/peterjc/clinod >> https://testtoolshed.g2.bx.psu.edu/view/peterjc/mira_assembler >> https://testtoolshed.g2.bx.psu.edu/view/peterjc/nlstradamus >> >> Meanwhile, on the main tool, "Exception: Job in error state." >> and not yet tested in December: >> >> https://toolshed.g2.bx.psu.edu/view/peterjc/blast2go >> >> It would be nice to have a more informative error here... > > Ugh - yes it clearly would - very sorry about that. > > https://trello.com/c/BZUaMnJB > >> >> Have these tools been automatically earmarked not to be retested? >> Note that some tools have been tested earlier this month: >> >> I also have a legitimate failure for missing tests, run 2014-12-09, >> https://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus >> > > Interesting... some tests did run though? Does the framework not > report passing tests - seems like it would be hard to know if it > working in that case.
The "Latest revision: all tool tests pass" search returns lots of repositories, but I must examine each one-by-one to see when the tests were last run. The sample I just checked on the main Tool Shed were all lasted tested 2014-11-23, https://toolshed.g2.bx.psu.edu/view/peterjc/align_back_trans https://toolshed.g2.bx.psu.edu/view/peterjc/blast_rbh https://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr https://toolshed.g2.bx.psu.edu/view/peterjc/clinod https://toolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id However at least some tests have been run in December, e.g. https://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus Things seem similar on the Test Tool Shed. Presumably you can sort the test results over the entire Tool Shed via a database search? That might help explain any pattern here. Thanks, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
