[galaxy-dev] Changing fasta_to_tabular_converter.py

2015-03-06 Thread Peter Cock
Hi all, I was just surprised to find what I consider to be a major bug in fasta_to_tabular_converter.py used to convert FASTA into tabular. Consider this toy example: >alpha ACGTAC >beta AGTGTA >gamma with some description AGGTACCA What the converter gives is two columns

[galaxy-dev] problem with revision updates for repositories.

2015-03-06 Thread Anna Terry
Hi, I have a few installed tool shed repositories which are showing that updates are available. When I click get repository updates, instead of the usual upate page, I get a page that simply says Found The resource was found at http://toolshed.g2.bx.psu.edu/repository/check_for_updates?galaxy_url

[galaxy-dev] Difference between hg pull -u (and) hg update stable?

2015-03-06 Thread Carlos Lijeron
Hello all, Is there any major difference between the commands hg pull -u (and) hg update stable when trying to update an existing local Galaxy installation? I tried running hg pull -u as suggested in the IRC channel, but nothing was updated. Then I ran the hg update stable and got this resul

Re: [galaxy-dev] Difference between hg pull -u (and) hg update stable?

2015-03-06 Thread Dannon Baker
Hi Carlos, Yes, there's a difference in hg pull and hg update. Here's a bit of an explanation I found on stackoverflow: https://stackoverflow.com/questions/4394273/whats-the-difference-between-update-and-pull 'hg update stable' probably switched you from the default branch to the stable branch (