[galaxy-dev] any working example of auth_conf.xml validating against openldap?

2015-05-20 Thread Pablo Escobar
Hi, currently I am validating my users with openldap in apache. As in the new release of galaxy there is native support to validate againts ldap from galaxy I have upgraded to latest galaxy release and I am trying to configure auth_conf.xml but I cannot manage to get it working with my openldap.

Re: [galaxy-dev] FW: tophat2 failing to execute

2015-05-20 Thread Martin Čech
Hi Eleanora, I am glad the update worked. Please keep the mailing list thread alive by using reply all. You are missing many smart people thinking about your problem if you don't. :) Let us know how it goes. Martin On Wed, May 20, 2015, 02:52 Eleanor Morgan e.mor...@curtin.edu.au wrote:

Re: [galaxy-dev] any working example of auth_conf.xml validating against openldap?

2015-05-20 Thread Pablo Escobar
Hi I reply myself...here is my working configuration authenticating galaxy with my openldap server https://gist.github.com/pescobar/6a2a038d40158e381fcd With this setup, the first login to galaxy has to be done with username/password so the account is created in the galaxy db with the email

Re: [galaxy-dev] Can't set value of conditional boolean parameter in tool tests

2015-05-20 Thread John Chilton
Peter - thanks for the detailed bug report! I believe this should be fixed with the following PR (https://github.com/galaxyproject/galaxy/pull/273) that has been merged into release_15.05 on github as well as the dev branch. I tried to fixed a few different bugs related to boolean and select

Re: [galaxy-dev] any working example of auth_conf.xml validating against openldap?

2015-05-20 Thread Nicola Soranzo
Hi Pablo, thanks for sharing your auth_conf.xml ! I think you may omit the dn from , it should be in the replacement dictionary automatically. I'll try to add something similar to auth_conf.xml.sample . Cheers, Nicola Il 20.05.2015 18:02 Pablo Escobar ha scritto: Hi I reply

Re: [galaxy-dev] Adding BioPython as a dependency to Galaxy

2015-05-20 Thread Peter Cock
On Wed, May 20, 2015 at 3:39 PM, Eric Rasche e...@tamu.edu wrote: Howdy Devs, I'd like to see BioPython added as an egg. I mentioned this on IRC, but it sort of fell off. A couple of users spoke positively about having it as a dependency. Do any of the devs have further opinions on this?