Re: [galaxy-dev] tools to reduce list of datasets.

To partially answer my own question an good example is: bam merge https://testtoolshed.g2.bx.psu.edu/repository?repository_id=aa54716b697c872f&changeset_revision=b874baf48b95 The key parts are: #for $input in $inputs ... One issue I still have is if there is

[galaxy-dev] Bowtie2

Hello, Please excuse my simple question since I'm a newbie... I've searched the mailing list but did not find the appropriate answer... I have a new Galaxy installation. I installed the tool "Bowtie2: Fast and sensitive read alignment" (Revision 019c2a81547a, Owner: devteam). The tool apparen

Re: [galaxy-dev] Bowtie2

Oups I made a mistake I have problems with the tophat wrapper, not bowtie. Bowtie runs fine... Tophat - fast splice junction mapper for RNA-Seq reads 4eb3c3beb9c7 Devteam Packages package_bowtie_2_2_5 and package_2_0_14 are installed... Thanks Martin De : Laforest, Martin Envoyé : 13 janv

[galaxy-dev] Graceful restart with uWSGI/Supervisor

Hi, To manage our galaxy server startup, I am trying to switch from an old init.d script to uWSGI and supervisor. I followed the help in https://wiki.galaxyproject.org/Admin/Config/Performance/Scaling, and I am now able to start, and even to stop galaxy (5 processes) and its 2 handlers. I a

Re: [galaxy-dev] Bowtie2

Seems to work after server reboot... Thanks Martin De : Laforest, Martin Envoyé : 13 janvier 2016 10:00 À : 'galaxy-dev@lists.galaxyproject.org' Objet : RE: Bowtie2 Oups I made a mistake I have problems with the tophat wrapper, not bowtie. Bowtie runs fine... Tophat - fast splice junction

Re: [galaxy-dev] Bowtie2

Awesome! Glad you got it to work. Am 13.01.2016 um 21:19 schrieb Laforest, Martin: > Seems to work after server reboot... > > Thanks > > Martin > > De : Laforest, Martin > Envoyé : 13 janvier 2016 10:00 > À : 'galaxy-dev@lists.galaxyproject.org' > Objet : RE: Bowtie2 > > Oups I made a mistake