Hi,
My question is to the docker-galaxy-stable community. I would like to use
or extend this image with some Galaxy settings externalized. For instance,
I would like to define my own GALAXY_UID and GALAXY_HOME environment
variables. I have tried the -e setting when I build and run the container,
b
ve your use-cases.
>
> > It's definitely nice being able to configure things like this at runtime
> > for e.g. differentiating between test and production! Would functionality
> > like this be useful/welcome in docker
will be is really close so I would like to
> not rush here. But as soon as we have release this version. We can try
> to get something in :dev that addresses these needs.
>
> What do you think? Can you create an Issue for it?
> Thanks!
> Bjoern
>
> Am 05.08.2015 um 15:39 sch
can fix it. Any
feedback, including your own stories for visualization setup or how I can
debug what's not being picked up where, would be greatly appreciated.
Cheers,
Oksana
--
::
Oksana Korol
dataquarry.blogspot.ca
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Please keep al
s of what
could have gone wrong with the visualization.
Cheers,
Oksana
Message: 1
> Date: Sat, 23 Jan 2016 19:55:47 +0100
> From: Björn Grüning
> To: Oksana Korol ,
> galaxy-dev@lists.galaxyproject.org
> Subject: Re: [galaxy-dev] Setting up visualization on Galaxy on CentO
/galaxy.ini.sample#L270
>
> Thanks,
> Bjoern
>
> Am 25.01.2016 um 15:46 schrieb Oksana Korol:
> > Thanks, Bjoern!
> >
> > For my local install of Galaxy, logging in as a user worked and the icon
> > is showing up (although I still had to manually go and
It get even trickier... I just double-checked my local install, and I
didn't have visualization_plugins_directory uncommented, and yet, it works
on local install
>This gets tricky, can you check if the visualisations are loacted under
>this path
If you mean phyoviz and other plugin code from
Thanks for the detailed breakdown of the places to check, Carl! I was able
to fix the issue following the steps you've outlined. For the benefit of
other readers, here is what I did to fix it:
On Tue, Jan 26, 2016 at 10:09 AM, Carl Eberhard
wrote:
> Hi, Oksana
>
> There are a few places to look
Hi,
Who is the administrator on Galaxy Main Toolshed (
https://toolshed.g2.bx.psu.edu)? I'm trying to re-set a password for the
work Galaxy toolshed account, but I think that the email is blocked by our
firewall. Who can I contact to resolve this issue?
Thanks!
Oksana
blocked by our
firewall. Who can I contact to resolve this issue?
Thanks!
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Oksana Korol
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package the tools depend on (
package_python_2_7_qiime_1_9_1) is already available on main toolshed. What
is the plan for making the wrappers, that depend on this package, available
on main toolshed as well?
Thanks a bunch!
--
::
Oksana Korol
Hey Bjoern,
I've just started learning qiime, so probably not the best person to write
tests / do clean up at the moment. Galaxy tool would have made my life much
easier, by way of figuring out this beast :).
Oksana
Hi Oksana,
>
> afaik a few more tests would be nice:
>
> https://github.com/gal
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