Re: [galaxy-dev] fml_gff3togtf: GTF-to-BED failes on numpy in Galaxy

Hi Curtis, Sorry for the trouble in using the converter package. I will fix the issues which you mentioned below. For a quick fix, I can point you to my working repository: https://github.com/vipints/GFFtools-GX This program will help you to convert the gff to 12 column bed file: https://github.

[galaxy-dev] Job submission failed

Hi dev-team, I am experiencing an issue with my production instance in dispatching the jobs. When I click on execute button, each tool page shows the popup error message as here: [image: Inline image 1] I am not sure what is happening, not getting any single line of error message in log file. He

Re: [galaxy-dev] Job submission failed

ne the upgrade to > "latest_15.03"? If so, did you experience any troubles during the database > schema upgrade to '128'? > > > Regards, Hans-Rudolf > > > On 04/20/2015 08:44 PM, Vipin TS wrote: > >> Hi dev-team, >> >> >> I am

Re: [galaxy-dev] Job submission failed

ne the upgrade to > > "latest_15.03"? If so, did you experience any troubles during the > database > > schema upgrade to '128'? > > > > > > Regards, Hans-Rudolf > > > > > > On 04/20/2015 08:44 PM, Vipin TS wrote: > >> > >

Re: [galaxy-dev] Job submission failed

load > works on this server and I believe that is using the same endpoint > POST /api/tools. I don't know why upload would work but all other > tools fail - but one possibility is the proxy is blocking the request > if it doesn't look like an upload. > > -John > > On

Re: [galaxy-dev] Job submission failed

put. (you can do > so privately at galaxy-b...@bx.psu.edu or mar...@bx.psu.edu) > > Thanks > > Martin > > > On Mon, Apr 27, 2015 at 2:54 PM Vipin TS wrote: > >> Hi John, >> >> Still the problem exist. The codebase is in latest_15.03 revision. >

Re: [galaxy-dev] Query

Hi Chang-Hyuk, Looks like the traceback truncated, Could you please pass me the complete error message from the job run, then I will have a look. Vipin | Rätsch Lab On Tue, Feb 23, 2016 at 11:04 PM, 유창혁 wrote: > Dear Sir, > > I used your "Convert Format" from gff file of NCBI. > but I encounte

[galaxy-dev] HTCondor tool runner configuration is not working properly on our Galaxy instance

Dear Galaxy Development team, I am deploying a clone of our public instance on a new infrastructure in another data center. In the new setup, a master node with Galaxy application running and have another couple of slave nodes connected via htcondor tool runner. Th

[galaxy-dev] abnormal termination at worker using supervisord

Dear developers, We are experiencing a job dispatching issue on our public galaxy instance ( https://galaxy.inf.ethz.ch/). On the compute machine, I am not able to start the workers. The following messages got from the worker log file: migrate.versioning.repository DEBUG 2018-01-30 12:23:41,816 R

[galaxy-dev] Galaxy with SELINUX

Dear Community, Is it possible to run the latest version of Galaxy on a SELINUX enabled machine? Thanks in advance! Vipin ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this