Hi, all,
I am new to Galaxy. The following error was encountered when I tried to run
Galaxy after getting PostgreSQL up:
File
"/home/galaxy/galaxy/eggs/sqlalchemy_migrate-0.9.6-py2.6.egg/migrate/versioning/version.py",
line 204, in script
"There is no script for %d version" % self.version
Hi, all,
I tried to download the playbook for automatic installation of Galaxy tools,
but encountered the following error:
[galaxy@Pegasus galaxy]$ git clone --recursive
g...@github.com:afgane/galaxy-tools-playbook.git
Initialized empty Git repository in
/home/galaxy/galaxy/galaxy-tools-playbo
com]
Sent: Thursday, March 3, 2016 10:59 AM
To: William Ge ; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] playbook download error
Hi,
try git clone --recursive
https://github.com/galaxyproject/ansible-galaxy-tools.git
Cheers,
Bjoern
Am 03.03.2016 um 19:54 schrieb William Ge:
Hi, all,
Sorry to bother you again. I am trying to install tools using the script. I
have downloaded the playbook, but stuck here:
[galaxy@Pegasus ansible-galaxy-tools]$ ansible-playbook tasks/tools.yml -i
"localhost," --extra-vars galaxy_tools_api_key=xcd2Glx
ERROR: pip is not a legal parame
somewhere?
Best regards,
Bill
From: Marius van den Beek
Sent: Friday, March 4, 2016 7:25 AM
To: Dannon Baker
Cc: William Ge; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] ERROR: PIP is not a legl parament of an Ansible Play
Hi Bill,
I think you&#x
uess this is Python 2.6
issue. Any solutions known?
Thanks,
Bill
From: Marius van den Beek
Sent: Friday, March 4, 2016 11:03 AM
To: William Ge
Cc: Dannon Baker; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] ERROR: PIP is not a legl parament o
From: Marius van den Beek
Sent: Friday, March 4, 2016 12:26 PM
To: William Ge
Cc: Dannon Baker; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] ERROR: PIP is not a legl parament of an Ansible Play
Thanks, Marius! That got me through!
The Galaxy
Hi,
Just wonder where I can download the full sample file of dbkeys_list.yaml,
which contents all the dbkeys and all DMs from the main tool shed. I'd
appreciate if you would send me a copy. The sample file that comes with the
ansible role only has a few lines.
Thanks,
Bill
any resulst. Please point me to
the right directions.
Thanks,
Bill
From: Marius van den Beek [mailto:m.vandenb...@gmail.com]
Sent: Friday, March 4, 2016 12:27 PM
To: William Ge
Cc: Dannon Baker ; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] ERROR: PIP is not a legl parament
the Galaxy subdirectories: i.e., all subdirectories (config, database,
tool-data, tools, static, etc) are in /home/galaxy/galaxy, while “shed_tools”
is in /home/galaxy. Do not know why.
Thanks,
Bill
From: Enis Afgan [mailto:enis.af...@irb.hr]
Sent: Thursday, April 7, 2016 7:06 AM
To: William Ge
and config
files already, similar to the cloud process, instead of a bare-bone
installation. It’s easier for beginners to turn off un-needed features, than to
turn on everyone.
Thanks,
Bill
From: Enis Afgan [mailto:enis.af...@irb.hr]
Sent: Friday, April 8, 2016 9:19 AM
To: William Ge
Cc: Marius
, April 8, 2016 9:19 AM
To: William Ge
Cc: Marius van den Beek ;
galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] ERROR: PIP is not a legl parament of an Ansible Play
The location of that dir is defined in shed_tool_conf.xml[.sample] and defaults
to ../shed_tools. The reasoning is
: William Ge
Cc: Enis Afgan ; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] ERROR: PIP is not a legl parament of an Ansible Play
Hi Bill, can you describe what exactly you have done?
What would be good is if you could post the beginning of your tool_list.yml
file,
the command that you
attachment did not get through. I will try to email you directly.
Thanks,
Bill
From: Marius van den Beek [mailto:m.vandenb...@gmail.com]
Sent: Thursday, April 21, 2016 10:39 AM
To: William Ge
Cc: Enis Afgan ; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] ERROR: PIP is not a legl parament of
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