Re: [galaxy-dev] Data manager problem

2016-05-11 Thread Will Holtz
Hi Dave, The NoDecode flag did work for me. I added a note to the apache configuration page of the galaxy wiki: https://wiki.galaxyproject.org/Admin/Config/ApacheProxy Thanks! -Will On Wed, May 11, 2016 at 10:23 AM, Dave Bouvier wrote: > Will, Scott, > > You should be able to use the NoDecode

Re: [galaxy-dev] Data manager problem

2016-05-11 Thread Dave Bouvier
Will, Scott, You should be able to use the NoDecode flag on the AllowEncodedSlashes option without any problems. Galaxy will have decoded the slashes internally by the time the request has reached the controller, and the tool in question will be found. - Dave Bouvier http://galaxyproject.org

Re: [galaxy-dev] Data manager problem

2016-05-11 Thread Will Holtz
Hello Scott, Thanks for the helpful reply! Adding"AllowEncodedSlashes On" did allow me to access the Data Manager tools. However, the Apache documentation has the following note, "If encoded slashes are needed in path info, use of NoDecode is strongly recommended as a security measure. Allowing sl

Re: [galaxy-dev] Data manager problem

2016-05-11 Thread Scott Szakonyi
Hi Will, We did manage to solve that problem by changing the Apache configuration. We added "AllowEncodedSlashes On" to httpd.conf. I'm not sure why the URL encoding changed, only that it did. See if that helps you. Best, Scott On Tue, May 10, 2016 at 8:17 PM, Will Holtz wrote: > Hi Scott, >

Re: [galaxy-dev] Data manager problem

2016-05-10 Thread Will Holtz
Hi Scott, I've recently hit the exact same problem. Have you had any success since then with resolving this? I did some poking around and made a bit of progress, but still no solution. The Data Manager page under Run Data Manager Tools contains URLs like this: https://galaxy.example.com/root?too

[galaxy-dev] Data manager problem

2016-04-11 Thread Scott Szakonyi
Hello, I'm having an odd problem after updating to the latest version of Galaxy. My users prepare data for analysis using data manager tools, such as "data_manager_bwa_mem_index_builder". When an attempt is made to run one of these tools, a pop up window opens stating "Tool request failed" and und