Re: [galaxy-dev] How to replace 'BioMart Central server' in the "Get Data" tools ?

The correct link is this: http://galaxy-dev.fmi.ch/tool_ runner/biomart?type=text&name=Homo%20sapiens%20genes%20% 28GRCh38.p5%29&URL=http://www.ensembl.org/biomart/martview/ 7ee294b9ae51a27f1e7ed96e712c5792? On Wed, Jun 8, 2016 at 11:33 AM Martin Čech wrote: > This looks like an Ensembl problem,

Re: [galaxy-dev] How to replace 'BioMart Central server' in the "Get Data" tools ?

This looks like an Ensembl problem, because they are prefixing the redirect url with "http://www.ensembl.org/

Re: [galaxy-dev] How to replace 'BioMart Central server' in the "Get Data" tools ?

Hi Martin we are still on "15.10" (minor version "2") However, I see the same issues on other public galaxy server which are already on 16.04 http://www.ensembl.org/galaxy-dev.fmi.ch/tool_runner/biomart?type=text&name=Homo%20sapiens%20genes%20%28GRCh38.p5%29&URL=http://www.ensembl.org/biomar

Re: [galaxy-dev] How to replace 'BioMart Central server' in the "Get Data" tools ?

Hello Hans-Rudolf, What version of Galaxy are you using? Can you please share a specific URL you were sent to that returns a 404? thanks M. On Wed, Jun 8, 2016 at 4:53 AM Hans-Rudolf Hotz wrote: > Hi all > > Please allow me to come back to this old problem: > > On usegalaxy.org, the tool is

Re: [galaxy-dev] How to replace 'BioMart Central server' in the "Get Data" tools ?

Hi all Please allow me to come back to this old problem: On usegalaxy.org, the tool is now pointing to http://www.ensembl.org/biomart/martview (see also: https://github.com/galaxyproject/galaxy/commit/c49e7803fa1814abd04afb26b54965fb7af612ac ) and it seems to work, i.e stuff is sent to usegal

[galaxy-dev] How to replace 'BioMart Central server' in the "Get Data" tools ?

Hi As you probably know, the central BioMart server is currently unavailable (see: http://www.biomart.org/notice.html). Hence, the "Get Data -> BioMart Central server" tool in our local Galaxy installation does not work anymore - well, this is also the case on usegalaxy.org. We can easily s