Re: [galaxy-dev] Job stuck in running state.

2016-03-15 Thread John Chilton
What kind of database backend are you using (postgres, myql, or the default sqlite)? If you are running many jobs - I would definitely encourage using postgres. -John On Sun, Mar 13, 2016 at 2:48 PM, Zuzanna K. Filutowska wrote: > Dear All, > > I am running newest

[galaxy-dev] Job stuck in running state.

2016-03-13 Thread Zuzanna K. Filutowska
Dear All, I am running newest version of Galaxy with PBS and I am observing strange behaviour: some jobs that were finished on the queue system are still shown as running on Galaxy Web interface. Communication with PBS server seems to work fine all the time. Nothing interesting seems to be in