Re: [galaxy-dev] R dependency problems with readline libraries

2016-10-03 Thread Nikolaos Tur
So... it seems there is not solution of this. And for the long time. Or I am wrong? And it is somehow related to ncurses. But ncrurses as well as readline are in the list of linked libraries. At least what I see in tool_dependencies.xml to Tiago Antao there is no conda there. Cheers, NIkolaos O

Re: [galaxy-dev] R dependency problems with readline libraries

2016-10-03 Thread Tiago Antao
Is there any part of conda here? This reminds me of the exact same problems that I had with a few libs (readline for example) and conda linkage. On 2016-10-03 13:37, Nicola Soranzo wrote: I suppose this is the same as https://github.com/galaxyproject/tools-devteam/issues/100 , just for a diffe

Re: [galaxy-dev] R dependency problems with readline libraries

2016-10-03 Thread Nicola Soranzo
I suppose this is the same as https://github.com/galaxyproject/tools-devteam/issues/100 , just for a different R version. Cheers, Nicola On 03/10/16 20:10, Nikolaos Tur wrote: Hi, installation of deseq2 1.10.0 causes next problem: /home/galaxy/galaxy/tools/dependencies/R/3.2.1/iuc/package_

[galaxy-dev] R dependency problems with readline libraries

2016-10-03 Thread Nikolaos Tur
Hi, installation of deseq2 1.10.0 causes next problem: /home/galaxy/galaxy/tools/dependencies/R/3.2.1/iuc/package_r_3_2_1/d9f7d84125b7/lib/R/bin/exec/R: error while loading shared libraries: libreadline.so.6: cannot open shared object file: No such file or directory Installed tool dependencies: d