Thanks Damion
We've got the collectl based metric collection stuff working and that dumps
data in the Galaxy DB (which you can pull out using the API).
Thanks,
Peter
On 17 March 2016 at 10:45, Dooley, Damion wrote:
> If you are looking for a simple python program to log cpu% and memory of
> an
If you are looking for a simple python program to log cpu% and memory of
another executable, then analyze.py might do. Its in
https://github.com/Public-Health-Bioinformatics/kipper/tree/master/RDP-test
-case along with a few scripts that show examples of its use.
Damion
>>
>> On 02/21/2016 11:13
Hi Peter,
The vision I had was a cron script admins could install which would send
thr past day/week's collectl/memory/parameter/dataset size logs to GRT.
Again, the GRT side stalled when I hit issues with collectl locally. If you
have time/energy to work on that we should chat :-) Otherwise I pl
Hi Eric
I'm having a look at the GRT. We're collecting metrics on our local Galaxy
server, I'm just trying to understand how you envision these metrics
getting into the GRT?
Peter
On 22 February 2016 at 07:31, Eric Rasche wrote:
> Hi peter,
>
> I've been working on this in the past but got cau
Hi peter,
I've been working on this in the past but got caught up in other
projects. There's work for a server-side component here (maybe 50%
done), the client side stuff could all be done through collectl but I
was having issues actually collecting collectl data that had put the
project on hold t
Hi there
We're researching the resource (CPU time and memory) requirements for RNA
STAR at the moment. Specifically, we'd like to build up a database of input
size to resource usage so that we can use this to feed a dynamic
destination mapper (currently our STAR configuration uses a thumbsuck for
