Re: [galaxy-dev] Tool Testing: field inputs that occur inside repeat tag - resolved

2015-02-28 Thread Peter Cock
On Fri, Feb 27, 2015 at 10:36 PM, Dooley, Damion damion.doo...@bccdc.ca wrote: Yay, with your tip, galaxy direct tests now work with tool_conf.xml AND data table in place! Galaxy DOC person: please update https://wiki.galaxyproject.org/Admin/RunningTests to state that tool_conf.xml.sample

Re: [galaxy-dev] Tool Testing: field inputs that occur inside repeat tag - semi resolved.

2015-02-27 Thread Peter Cock
On Fri, Feb 27, 2015 at 8:58 PM, Dooley, Damion damion.doo...@bccdc.ca wrote: First, hey Peter, thanks for input! I'd seen the explicit piping before, couldn't remember its format though; I will switch to it. Well, after a morning of testing, I see the test system is actually finding the

Re: [galaxy-dev] Tool Testing: field inputs that occur inside repeat tag - resolved

2015-02-27 Thread Dooley, Damion
Yay, with your tip, galaxy direct tests now work with tool_conf.xml AND data table in place! Galaxy DOC person: please update https://wiki.galaxyproject.org/Admin/RunningTests to state that tool_conf.xml.sample is NOT used for testing! It is stated in the run_tests.sh help info half way

[galaxy-dev] Tool Testing: field inputs that occur inside repeat tag

2015-02-26 Thread Dooley, Damion
Helop aI've been testing (using planemo) some tools scheduled for toolshed publication. My first test works, but Galaxy reports that the second one fails with: Parameter %s requires a value, but has no legal values defined % self.name AssertionError: Parameter filter_column requires a value,