Re: [galaxy-dev] shed_tool_conf.xml

2016-03-22 Thread Hans-Rudolf Hotz
On 03/22/2016 12:56 PM, Peter Cock wrote: I would try validating the broken XML file (e.g. using an online tool, or an XML aware editor). That might be enough to find the error and fix it by hand. I don't know if there is a clever way to regenerate the file instead... probably a lot of

Re: [galaxy-dev] shed_tool_conf.xml

2016-03-22 Thread Bjoern Gruening
As Peter already mentioned a XML validator is a nice tool for this purpose. For example this one: http://www.xmlvalidation.com A stupid way to do that is to remove the half bottom of your xml and open it using Firefox for example. If OK Add the half top of the half bottom -> firefox

Re: [galaxy-dev] shed_tool_conf.xml

2016-03-22 Thread Rathert , Philipp , Dr .
: Peter Cock <p.j.a.c...@googlemail.com> Sent: Tuesday 22nd March 2016 12:56 To: Rathert, Philipp, Dr. <philipp.rath...@ibc.uni-stuttgart.de> Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] shed_tool_conf.xml I would try validating the broken XML file (e.g. using an

Re: [galaxy-dev] shed_tool_conf.xml

2016-03-22 Thread Peter Cock
I would try validating the broken XML file (e.g. using an online tool, or an XML aware editor). That might be enough to find the error and fix it by hand. I don't know if there is a clever way to regenerate the file instead... Peter On Tue, Mar 22, 2016 at 11:49 AM, Rathert, Philipp, Dr.

[galaxy-dev] shed_tool_conf.xml

2016-03-22 Thread Rathert , Philipp , Dr .
Dear all, I think I made a really stupid mistake. I edited the shed_tool_con.xml file to change the order and section of tools. Doing this I might have introduced an error I cannot locate. However (now comes the stupidity), I didn't save the old version of the shed_tool_conf.xml file...