Re: [galaxy-dev] Galaxy API to upload files to data library

2015-06-29 Thread Ryan G
Perfect. Thanks! On Fri, Jun 26, 2015 at 6:02 PM, Martin Čech wrote: > The second link leads to an endpoint that does exactly that. > M. > > > On Fri, Jun 26, 2015 at 4:43 PM Ryan G > wrote: > >> What if the data is not in the history? Ie we received ngs data from an >> external source and c

Re: [galaxy-dev] Galaxy API to upload files to data library

2015-06-26 Thread Martin Čech
The second link leads to an endpoint that does exactly that. M. On Fri, Jun 26, 2015 at 4:43 PM Ryan G wrote: > What if the data is not in the history? Ie we received ngs data from an > external source and copied it to a location on our server. I now want to > link to it in Galaxy. > > What I

Re: [galaxy-dev] Galaxy API to upload files to data library

2015-06-26 Thread Ryan G
What if the data is not in the history? Ie we received ngs data from an external source and copied it to a location on our server. I now want to link to it in Galaxy. What I was doing previously was entering the file system path through the UX but we want to automate this a bit and have a s

Re: [galaxy-dev] Galaxy API to upload files to data library

2015-06-26 Thread Martin Čech
History Dataset Association. i.e. if you already have the dataset in history you can very easily import it to a data library. M. On Fri, Jun 26, 2015 at 1:23 PM Ryan G wrote: > What is HDA? > > Sent from my iPhone > > On Jun 26, 2015, at 1:10 PM, Martin Čech wrote: > > Hello Ryan, > > for inte

Re: [galaxy-dev] Galaxy API to upload files to data library

2015-06-26 Thread Ryan G
What is HDA? Sent from my iPhone > On Jun 26, 2015, at 1:10 PM, Martin Čech wrote: > > Hello Ryan, > > for interacting with libraries through the Bioblend: > http://bioblend.readthedocs.org/en/latest/api_docs/galaxy/all.html#module-bioblend.galaxy.libraries > > for loading data to libraries f

Re: [galaxy-dev] Galaxy API to upload files to data library

2015-06-26 Thread Martin Čech
Hello Ryan, for interacting with libraries through the Bioblend: http://bioblend.readthedocs.org/en/latest/api_docs/galaxy/all.html#module-bioblend.galaxy.libraries for loading data to libraries form the Galaxy's system (e.g. after FTP upload, or when admin): https://github.com/galaxyproject/gala

Re: [galaxy-dev] Galaxy API to upload files to data library

2015-06-26 Thread Ryan G
By browsing the api code, I discovered library_contents.py that looks like it should be used. Why this and not folder_contents.py? There seems to be overlap of these two. I would expect to upload files to folders within libraries... On Thu, Jun 25, 2015 at 2:43 PM, Ryan G wrote: > Hi all - I