Re: [galaxy-dev] Issue writing functional tool test with repeat tag in config
Christy, You may be interested in using planemo for local testing of tools, rather than waiting for the automated tool shed testing. http://planemo.readthedocs.org/en/latest/ http://planemo.readthedocs.org/en/latest/commands.html#test-command Cheers, Eric 2015-04-21 15:25 GMT-05:00 Christy Shafer : > Thanks, Dan; the Tool Shed accepted the repo as a valid utility now (big > oops on my part). I had to make a few other corrections to the wrapper > script as well, so we’ll see how the automated tool testing goes… Do you > know how often testing is conducted on the site? > > Thanks again, > C > > On Apr 21, 2015, at 2:46 PM, Daniel Blankenberg wrote: > > > Hi CS, > > > > I assume you have the rest of the tags, but didn’t paste it here. > > > > One thing is that you need to close your test and tests elements > properly: > >> > >> > > > > > > > > > > You may want to pass your config through a simple xml validator to try > to shake any other issues out as well. > > > > > > > > Thanks for using Galaxy, > > > > Dan > > > > > > On Apr 21, 2015, at 3:40 PM, Christy Shafer > wrote: > > > >> Hello, > >> > >> I'm trying to format a test tag in a tool config for the public Tool > Shed that includes a repeated input parameter. I followed the syntax > suggested in the following archived galaxy-dev post (was unable to find > much other guidance): > http://git.net/galaxy-development-source-control/msg15241.html, but the > config file must be invalid because my repository on the Tool Shed does not > register as an installable Galaxy utility. Any guidance is much > appreciated.. Below are the relevant config code sections: > >> > >> > >> > >> format="tabular" label="Join" /> > >> type="data_column" data_ref="joinMe" /> > >> > >> > >> Yes > >> No > >> > >> > >> > >> > >> > >> > >> > >> ftype="tabular"/> > >> > >> ftype="tabular"/> > >> > >> ftype="tabular"/> > >> > >> > >> ftype="tabular"/> > >> > >> > >> > >> Thanks for your help, > >> CS > >> ___ > >> Please keep all replies on the list by using "reply all" > >> in your mail client. To manage your subscriptions to this > >> and other Galaxy lists, please use the interface at: > >> https://lists.galaxyproject.org/ > >> > >> To search Galaxy mailing lists use the unified search at: > >> http://galaxyproject.org/search/mailinglists/ > >> > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > -- Eric Rasche Programmer II Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 e...@tamu.edu rasche.e...@yandex.ru ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Issue writing functional tool test with repeat tag in config
Thanks, Dan; the Tool Shed accepted the repo as a valid utility now (big oops on my part). I had to make a few other corrections to the wrapper script as well, so we’ll see how the automated tool testing goes… Do you know how often testing is conducted on the site? Thanks again, C On Apr 21, 2015, at 2:46 PM, Daniel Blankenberg wrote: > Hi CS, > > I assume you have the rest of the tags, but didn’t paste it here. > > One thing is that you need to close your test and tests elements properly: >> >> > > > > > You may want to pass your config through a simple xml validator to try to > shake any other issues out as well. > > > > Thanks for using Galaxy, > > Dan > > > On Apr 21, 2015, at 3:40 PM, Christy Shafer wrote: > >> Hello, >> >> I'm trying to format a test tag in a tool config for the public Tool Shed >> that includes a repeated input parameter. I followed the syntax suggested in >> the following archived galaxy-dev post (was unable to find much other >> guidance): http://git.net/galaxy-development-source-control/msg15241.html, >> but the config file must be invalid because my repository on the Tool Shed >> does not register as an installable Galaxy utility. Any guidance is much >> appreciated.. Below are the relevant config code sections: >> >> >> >> > label="Join" /> >> > data_ref="joinMe" /> >> >> >> Yes >> No >> >> >> >> >> >> >> >> > ftype="tabular"/> >> >> > ftype="tabular"/> >> >> > ftype="tabular"/> >> >> >> > ftype="tabular"/> >> >> >> >> Thanks for your help, >> CS >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ >> > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Issue writing functional tool test with repeat tag in config
Hi CS, I assume you have the rest of the tags, but didn’t paste it here. One thing is that you need to close your test and tests elements properly: > > You may want to pass your config through a simple xml validator to try to shake any other issues out as well. Thanks for using Galaxy, Dan On Apr 21, 2015, at 3:40 PM, Christy Shafer wrote: > Hello, > > I'm trying to format a test tag in a tool config for the public Tool Shed > that includes a repeated input parameter. I followed the syntax suggested in > the following archived galaxy-dev post (was unable to find much other > guidance): http://git.net/galaxy-development-source-control/msg15241.html, > but the config file must be invalid because my repository on the Tool Shed > does not register as an installable Galaxy utility. Any guidance is much > appreciated.. Below are the relevant config code sections: > > > >label="Join" /> >data_ref="joinMe" /> > > >Yes >No > > > > > > > >ftype="tabular"/> > >ftype="tabular"/> > >ftype="tabular"/> > > >ftype="tabular"/> > > > > Thanks for your help, > CS > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
