Re: [galaxy-dev] Upgrade to Galaxy 16.07, import dumps problem

2016-08-26 Thread D K
Great! that fixed the issue On Fri, Aug 26, 2016 at 10:20 AM, Dannon Baker wrote: > Ok, so it should be gone, I guess. Check 'git status', maybe it's just > there as an untracked file (and if so, just rm it)? > > On Fri, Aug 26, 2016 at 12:55 PM, D K wrote: > >> Hi Dannon, >> >> There's your

Re: [galaxy-dev] Upgrade to Galaxy 16.07, import dumps problem

2016-08-26 Thread Dannon Baker
Ok, so it should be gone, I guess. Check 'git status', maybe it's just there as an untracked file (and if so, just rm it)? On Fri, Aug 26, 2016 at 12:55 PM, D K wrote: > Hi Dannon, > > There's your commit where you describe removing it. So why is it still > there if I did a git pull (did I do t

Re: [galaxy-dev] Upgrade to Galaxy 16.07, import dumps problem

2016-08-26 Thread D K
Hi Dannon, There's your commit where you describe removing it. So why is it still there if I did a git pull (did I do this incorrectly?)? I did a "git log -- cloudlaunch.py" and got the following: commit 303597e48a8503aac09c33910aa5482a374f06a1 Author: Dannon Baker Date: Wed Aug 12 14:17:44 2

Re: [galaxy-dev] Upgrade to Galaxy 16.07, import dumps problem

2016-08-26 Thread Dannon Baker
Can you check the git log for that controller, to see how it got added back to, or remained in, the codebase? On Fri, Aug 26, 2016, 12:40 PM D K wrote: > Hi Dannon, > > Yes, the > "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py" > does still exist. > > If i

Re: [galaxy-dev] Upgrade to Galaxy 16.07, import dumps problem

2016-08-26 Thread D K
Hi Dannon, Yes, the "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py" does still exist. If it's relevant I did a: git commit -a -m 'changes made locally prior to upgrade to 16.07' git pull origin master I had to move the file "lib/galaxy/datatypes/checkers.

Re: [galaxy-dev] Upgrade to Galaxy 16.07, import dumps problem

2016-08-26 Thread Dannon Baker
Can you check to see if that file (/remote/home/galaxyd/tmp/ galaxy2/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py) does still exist? If it does not, it may be a leftover .pyc file (which you can delete safely). If you'd like to just clean out *all* the compiled python (which is also safe)

Re: [galaxy-dev] Upgrade to Galaxy 16.07, import dumps problem

2016-08-26 Thread D K
I have modified some files in my own local galaxy commit (I think only the sniffers in lib/galaxy/datatypes) On Fri, Aug 26, 2016 at 9:31 AM, Dannon Baker wrote: > Hey DK, > > The cloudlaunch controller was deprecated and should not be in 16.07. Is > this a custom modification you have? > > -

Re: [galaxy-dev] Upgrade to Galaxy 16.07, import dumps problem

2016-08-26 Thread Dannon Baker
Hey DK, The cloudlaunch controller was deprecated and should not be in 16.07. Is this a custom modification you have? -Dannon On Fri, Aug 26, 2016 at 12:30 PM, D K wrote: > Hi Galaxy-devs, > > I just tried upgrading to 16.07 from 16.01 and get this error when > starting up: > > >> Traceback (