Re: [galaxy-user] Galaxy server issues?

David K Crossman wrote: > Hello! > > We uploaded 12 samples to Galaxy last night via FTP. This > morning, I went to "Get Data" and clicked on all 12 that were under the FTP > location, chose the type of file they were and reference genome and then > clicked "Excecute." The 12

[galaxy-user] Galaxy server issues?

Hello! We uploaded 12 samples to Galaxy last night via FTP. This morning, I went to "Get Data" and clicked on all 12 that were under the FTP location, chose the type of file they were and reference genome and then clicked "Excecute." The 12 moved over to the History panel and

[galaxy-user] Chip-Seq, Encode Peaks and Galaxy

Hi everyone, I have a list of genomic regions with some variants and would like to study the correlation between theses variants and epigenomics marks such as histone modifications. >From Encode download page, i got some files corresponding to peaks of these hsitone modifications and would like t

[galaxy-user] Galaxy Workshops @ USC June 23-24

Hello all, There will be two Galaxy workshops at the University of Southern California (USC) next week. Both are presented by Jeremy Goecks of Emory University and the Galaxy team. *Both workshops are open to the public:* *Galaxy: A web‐based workbench for interactive and reproducible analysis of

[galaxy-user] Extract Genomic DNA Problem

Hi, I was trying to extract FASTA sequences using the following tab separated data for Chicken on the Galaxy Main server: chr5 4725816847259240 chr181938527 1939965 chr2 101973625 101974007 chr4 7565389875674045 chr194258837 4263299 chr4

Re: [galaxy-user] New Galaxy User

Gaurav > 1. Is there any help file explaining directory structure and what all > configuration files used for? The Galaxy wiki is the best place to go for these things, as Louise-Amelie said. You should be able to ignore most things in the config files initially as they will "just work". You