Re: [galaxy-user] Galaxy not showing my reference genome in Drop down for BowTie

2012-10-10 Thread greg
Thanks Jen. But it looks like the datatype was already set to fasta. I tried setting it again and saving but it didn't seem to help. Is there anything else I can try? thanks, Greg On Tue, Oct 9, 2012 at 9:10 PM, Jennifer Jackson j...@bx.psu.edu wrote: Hi Greg, Nice pic, it helps! My guess

Re: [galaxy-user] Galaxy not showing my reference genome in Drop down for BowTie

2012-10-10 Thread Dannon Baker
Looking at your screenshot, you have Use a built-in index selected. If you change this to Use one from the history, do you see your fasta file listed? -Dannon On Oct 10, 2012, at 9:02 AM, greg margeem...@gmail.com wrote: Thanks Jen. But it looks like the datatype was already set to fasta.

Re: [galaxy-user] Galaxy not showing my reference genome in Drop down for BowTie

2012-10-10 Thread greg
Yes that was it! I knew I was missing something obvious. Thanks, Greg On Wed, Oct 10, 2012 at 9:06 AM, Dannon Baker dannonba...@me.com wrote: Looking at your screenshot, you have Use a built-in index selected. If you change this to Use one from the history, do you see your fasta file

Re: [galaxy-user] from Galaxy to Megan

2012-10-10 Thread Jennifer Jackson
Hi Judith, The analysis in the paper focused on profiling taxonomic ranks. This was done with Megablast versus the GenBank databases NT WGS. The accession identifiers being associated with nucleotide data, not protein (as would result from a comparison against NR), is most likely the