[galaxy-user] BioStar integration - merging accounts

2014-04-24 Thread Peter Cock
Hi all, I see that https://biostar.usegalaxy.org is live now, with lots of content mined from the galaxy-user mailing list (which may or may not result in this email starting a new question? We shall see...). Is it possible for an admin to merge accounts? e.g. there are all me:

Re: [galaxy-user] BioStar integration - merging accounts

2014-04-24 Thread Peter Cock
On Thu, Apr 24, 2014 at 2:40 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Hi all, I see that https://biostar.usegalaxy.org is live now, with lots of content mined from the galaxy-user mailing list (which may or may not result in this email starting a new question? We shall see...). Is it

[galaxy-user] Is the Server Down?

2014-04-24 Thread Scott Tighe
Jennifer I have been trying to megablast some sequences for a few days now but it seems that the server is down. Can you advise? Scott -- Scott Tighe Senior Core Laboratory Research Staff Advanced Genome Technologies Core NextGen Sequencing/Flow Cytometry University of Vermont and Vermont

Re: [galaxy-user] Is the Server Down?

2014-04-24 Thread Jennifer Jackson
Hello Scott, The public Main usegalaxy.org server is up. The most current status is always posted here: http://status.galaxyproject.org/. Our Test server was down for a while today, but that is not recommended for important work. We really do test there (test is for breaking!). Or do you

Re: [galaxy-user] 'filter pileup' not working on 'generate pileup' output

2014-04-24 Thread Jennifer Jackson
Hi Matthew, The output will have the datatype assigned as 'tabular'. Assign this as 'mpileup' to have the filter tool recognize the dataset. Another option is to use 'MPileup' with default options ( Genotype Likelihood Computation: as positive creates a .bcf output). To change tabular -

Re: [galaxy-user] BioStar integration - merging accounts

2014-04-24 Thread Jennifer Jackson
Hi Peter, Correct, we are not set up for that now. And as the Getting Started note states, if this changes or when there enhancements in general, we'll notify all. This is just the first roll-out! Everyone should just have one usegalaxy.org (Main) account. Entering Galaxy Biostar from Main,