[galaxy-user] CpG Masking changing alignment length?

Hi All, I have a general question about CpG masking. I have a .maf file, when I use the maf to fasta tool, it gives me an alignment of 2,735,329 bp. But if I CpG mask the .maf file (restricted definition) then I use the maf to fasta tool, I get a very different alignment length, 5,572,544 bp.

Re: [galaxy-user] CpG Masking changing alignment length?

Hi, Sorry, a correction (I had the lengths reversed): Original .maf maf to fasta length is 5572544 Original .maf CpG mask maf to fasta length is 2735329 Thanks, Mike On Thu, Mar 10, 2011 at 8:53 AM, Michael E. Steiper michaelstei...@gmail.com wrote: Hi All, I have a general question