[galaxy-user] Subtract Whole Dataset

Hello all, I am having troubles with the Subtract Whole Dataset function - i've tried subtracting one BAM file from another and got as an output a bai file. I need it to be a BAM file so i can convert it to SAM and see the data in a none binary form. Anyone have any thoughts on the issue? Thank

[galaxy-user] subtract

Hello, I am using the subtract (whole dataset) tool. I converted my fastq file to tabular with 2 columns: 1. Identifier and 2. sequence. I then selected (a few) lines that match an expression from this initial tabular file and am trying to get a final dataset that is devoid of reads with the