Hi
I currently use a galaxy server with cluster. This cluster uses SGE.
I'd like to specify a queue other than the default.
I have tried many combinaisons with drmaa:/// without success. The queue
used is always the default one.
Does anyone has solved this problem?
Thanks,
Sylvain
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On Tue, May 3, 2011 at 10:00 AM, Robin Mjelle robinmje...@gmail.com wrote:
Dear User,
I am trying to use the tool Compute quality statistics in galaxy on
Ilumina single reads. The file is 2.3 Gb, fastq format. I have performed
Quality format converter on the data set and the format is now
Hi,
I recently sent out an email asking if anyone knew much about analysis of SNPs
etc and how to visualise them. I got some very useful answers and planned to
return to the problem when I got a better chance to work on this in some depth.
I now have the time but, like an idiot, I've
Hi David,
For NGS data, the tools under NGS: Indel Analysis can build simple BED
files of indels from SAM files that can be viewed in Galaxy
(Visualization tab - i.e. Trackster). For viral genomes, you will not be
able to use UCSC. The Galaxy 101 tutorial includes some basic SNP
analysis and
Hi Robin,
Run the FASTQ Groomer on your datafile first, then use the result as
input to the Compute quality statistics tool. (Skip using Quality format
converter).
Hopefully this helps,
Jen
Galaxy team
On 5/3/11 2:00 AM, Robin Mjelle wrote:
Dear User,
I am trying to use the tool Compute
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