Greetings,
I am using Galaxy Main;
On 8/1/2013, and after 'trimming sequences' on my 'FASTQ groomed' data, I
attempted to align my (single-end) 'trimmed sequences' output data to 'hg19
Canonical male' with 'Map with Bowtie for Illumina'
It is now 8/3/2013, and the 'Map with Bowtie for Illumina'
Hi,
I am preferentially using the main server. But recently I have also tried
to build a local Galaxy server. I also have a mac (Mac Pro OSx 10.6.8).
Since I am not a specialist at all, I asked some kind of expert people
from my institute. They told me that installing Galaxy on Mac can really
be
Hello all,
The Galaxy Project is asking for your help on how we should focus our
training efforts for the coming year. If you are interested in Galaxy
Training, please take a few minutes to let us know what you would like to
see offered, and where you would like training to be held:
Hi Moritz,
I'm forwarding your message to galaxy-user mailing list and Jennifer from
Galaxy. Between the two, you should be able to get some help because
unfortunately this is not my area of expertise so I'm afraid I won't be of
much help.
Good luck,
Enis
-- Forwarded message --
Hi Moritz,
For a quick breakdown of a variant pipeline, this recent workshop has
slides. Basically you map (BWA is a good choice), choose a variant
caller (Freebayes or other), and look at associated annotation ( SnpEff):
Hello Sachit,
If you are running a local Galaxy, the full path to datasets is
noted on the "info" page, found by clicking on the circled "i" icon
between the disc and blue re-run button.
You can click on the pencil icon (top upper right corner) and
I am also dead in the water. I sent a post to this effect last week. Last
Friday I left a job queued up on the main server and as of this morning, it
still had not run after 2-1/2 days. Can someone notify us about what is wrong,
and what is being done to fix it?
Best regards,
Sam
Hello Larry,
The Manipulate Fastq tool only brings up the regular trimmer tools
again once sequence and trim are selected, so this will not work. And
a regular expression could be used as a filter, but that will not
actually trim the data.
If you choose to filter, this regular expression
Hi...
I haven't used Galaxy for a while, and forgot my password. The problem
with resetting it is that the email I used is no longer active: I graduated.
I need to access the files I uploaded, as its appearing that they did not
collapse in the 'collapse' function properly: I have the same
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