Re: [galaxy-user] uploading files from remote server

Hello Camelia, Here is a link to a prior reply posted by one of our power users with details also relevant to your question: http://lists.bx.psu.edu/pipermail/galaxy-user/2011-March/002135.html Although the above reply was sent to the galaxy-user mailing list, you may find that using the gal

Re: [galaxy-user] Only first 5000 reads are displayed in this tile

Hi Jeremy, The limit means that for the span where the red line is, only the first 5000 features sorted by start position, starting from the tile with the red line, is shown. That usually means it will cut off at some point midway through the tile.. it doesn't indicate that the blank part of the t

Re: [galaxy-user] runtime warning with pysam egg

On Apr 29, 2011, at 9:10 AM, Nate Coraor wrote: Shantanu Pavgi wrote: Hi, I am getting following warning when I start the galaxy server. I am using latest revision (50e249442c5a) of galaxy-dist. Am I missing anything in the configuration here? {{{ $ ./run.sh /home/galaxy/.python-eggs/pysam-

Re: [galaxy-user] Removing deleted datasets

Simon, In order for a dataset file to be removed from disk, no active library associations (LibraryDatasetDatasetAssociations) or history associations (HistoryDatasetAssociations) can be pointing to it. When no active association objects are pointing to a dataset file, it will ultimate be remo

[galaxy-user] uploading files from remote server

How can we upload files from remote server running galaxy and using big storage for data ? Thank you ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Pl

[galaxy-user] Removing deleted datasets

Hi. Our current galaxy database is ~ 600 gb, most of which are user deleted datasets. I followed the instructions here: https://bitbucket.org/galaxy/galaxy-central/wiki/Config/PurgeHistoriesAndDatasets and ran the shell scripts in recommended order. One of them in particular (I think it was purg