Hello everyone
I am trying to upload files on galaxy main since yesterday and I can't
get it work.
The files I want to upload are RNAseq fastq files from ENCODE (about 8
Go in size). So I first tried to use the http address of the files. The
job is running forever but without finishing and
Hello Nancy,
The attribute sounds as if it is the correct place in the reference
annotation file (the 9th field), but perhaps there are other
format/content problems with the file. Do you have a tss_id? Do you have
exons labeled?
This is the area of the manual that covers the formatting and
Hello Emmanuelle,
I just tested FTP upload and is was fine. The problem is the server
name, it is now: usegalaxy.org
Same credentials, email and password.
It is difficult to diagnose the URL loading method issue without an
example. If this is still a problem today, you can send a URL and we
Hi Jennifer,
I did see tss_id in my results and also exon labels. The tss_id was
assigned during the calculation, having the numbers tss1, tss2, etc. By
saying writing codes I mean such as in the link you sent to me, there is:
*Note: *If an arbitrary GTF/GFF3 file is used as input (instead of
Hi Nancy,
It is not quite clear in which steps you used the reference annotation
or how these attributes were lost exactly. Cuffcompare is a tool in
Galaxy - but before we go any further I think that examining the history
would be the speedest path to a solution. Would you share a history
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