Hello,
I'm new to Galaxy so I think i'm at the right place asking this, though
please let me know if I got it all wrong.
I sent a Tophat query on Thursday about 5 days ago and it is still waiting
to ran (gray background).
Is to O.k? A bug? Should i keep waiting or stop everything and restart?
Is it possible? If so, how?
Thank you,
Lilach
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I have ran Tophat v1.4.0 and it is marked red and has an error
long_spanning_reads.
What does this mean?
what should i do?
Thank you,
Lilach
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hello all,
Does anyone know if in order to use Slice bam I need to sort the bam file
first or does galaxy automatically sort any bam file uploaded?
Many thanks,
Lilach Noy
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of
the file listed contain the command line issues by Galaxy.
From: lilach noy lilach...@gmail.com
Date: Tuesday, August 27, 2013 7:29 AM
To: galaxy-u...@bx.psu.edu galaxy-u...@bx.psu.edu
Subject: [galaxy-user] watching command line to a query
Hello,
How can i see the command line
And if I use the web interface? can I watch the command line there?
2013/8/27 Peter Cock p.j.a.c...@googlemail.com
On Tue, Aug 27, 2013 at 2:07 PM, lilach noy lilach...@gmail.com wrote:
Thank you for the reply.
Where can i find the log file?
As an ordinary Galaxy user, I'm not sure
Hello all,
I am having troubles with the Subtract Whole Dataset function - i've tried
subtracting one BAM file from another and got as an output a bai file.
I need it to be a BAM file so i can convert it to SAM and see the data in a
none binary form.
Anyone have any thoughts on the issue?
Thank
Hi all,
Has anyone used FASTQ joiner with a file containing multi-mapped reads?
I'm pretty sure i have reads mapped to several locations and i don't know
what this tool does with it? will it locate the right map according to the
paired read? will it use the first read location and ignore the rest
Hey there,
I am trying to add a custom track of a bed file through Galaxy and i keep
getting this error:
- Error line 325149 of
https://main.g2.bx.psu.edu/root/display_as?id=11632524display_app=ucscauthz_method=display_at:
chrM_rCRS not a recognized sequence (note: sequence names are
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