Dear all,
that has probably been asked 10e6 times, however, I don't find any comments on
how to properly escape special characters in a toolxy.xml. What I want to
achieve is the following:
command interpreter=bash$myScript $logFile/command
where myScript is dynamically created (as part of
to
$logFile:
amp;
amp;gt;
#38;#62;
Any other suggestions?
Cheers,
Uwe
-Ursprüngliche Nachricht-
Von: Peter Cock [mailto:p.j.a.c...@googlemail.com]
Gesendet: Montag, 24. Oktober 2011 10:06
An: Appelt, Uwe
Cc: galaxy-user@lists.bx.psu.edu
Betreff: Re: [galaxy-user] tool.xml console
solved! Thanks Peter!!!
Cheers,
Uwe
-Ursprüngliche Nachricht-
Von: Peter Cock [mailto:p.j.a.c...@googlemail.com]
Gesendet: Montag, 24. Oktober 2011 11:07
An: Appelt, Uwe
Cc: galaxy-user@lists.bx.psu.edu
Betreff: Re: [galaxy-user] tool.xml console redirection within command-tag
On Mon, Oct
-Ursprüngliche Nachricht-
Von: Peter Cock [mailto:p.j.a.c...@googlemail.com]
Gesendet: Montag, 24. Oktober 2011 12:06
An: Appelt, Uwe
Cc: galaxy-user@lists.bx.psu.edu; galaxy-...@lists.bx.psu.edu
Betreff: Re: [galaxy-user] tool.xml console redirection within command-tag
Hi Uwe,
On Mon
Dear all,
My tool does accept multiple input-files, but there are normally bunches of
them, so the repeat-syntax doesn't appear to be a good idea. Inspired from
the workflow-engine-capability to accept multiple input files I wanted to do
the same for my tool:
param name=inputSeqFiles
Hi @All,
short version:
Is it possible to specify more arguments in Full parameter list-mode,
particularly those that're implicitely described in YASRA-mode (match/mismatch
rewards and step-size (Z/step))?
long version:
I'm dealing with 454 reads and it's crucial to the scenario to have the 5'
6 matches
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