Hi, I've been trying to use the extra DNA tool but I keep getting an error:
Traceback (most recent call last): File
/galaxy/main/server/tools/extract/extract_genomic_dna.py, line 300, in if
__name__ == __main__: __main__() File
/galaxy/main/server/tools/extract/extract_genomic_dna.py, line 113,
Hello, I have been using the compute function in galaxy to replace
sequences with delimiters for processing my reads. I realized that the
replace code in compute no longer works. Is there any other way to
replace sequences with delimiters?
Jose
Hello, I have a bed file in this format: chr# start end scores. I tried
to view it in ucsc main but it showed only where the fragments are(based on
the start and end coordinates) with numerical scores beside each fragment.
How do I view the file as a histogram format? What format will I need
will be enough, if not you might be required to
enter a track line. See UCSC for details.
On Thu, May 10, 2012 at 9:04 PM, Xianrong Wong won...@gmail.com wrote:
Hello, I have a bed file in this format: chr# start end scores. I tried
to view it in ucsc main but it showed only where the fragments
Hello, I am using the subtract (whole dataset) tool. I converted my fastq
file to tabular with 2 columns: 1. Identifier and 2. sequence. I then
selected (a few) lines that match an expression from this initial tabular
file and am trying to get a final dataset that is devoid of reads with the
5 matches
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