Hi Edward,
We will add the new yeast genome from Feb 2011 to our working list of
genomes to add. (r64 dated Feb-3-2011 at SGD, dated April 2011 at NCBI).
This confirmed with SGD directly to be a more current version that the
two currently at Galaxy. The S288C_reference_genome_r64.tar.gz downl
Hi Jen,
Could you update the yeast genome to match the following 2011 release?
Ensembl release 9 for Fungal database (which is dependant on SGD database)
[link : http://fungi.ensembl.org/Saccharomyces_cerevisiae/Info/Index].
Thank you,
Edward
On Jun 27, 2011, at 11:58 AM, Jennifer Jackson wrote
Hello Edward,
The database Saccharomyces_cerevisiae_S288C_SGD2010 could be considered
an update (newer release) of the SGD/sacCer2 database, since the source
is the same - SGD:
http://www.yeastgenome.org/
UCSC did not update to this newer version of the genome (yet), which is
why in Galaxy i
For yeast analysis I use the following assembly: S. cerevisiae June 2008
(SGD/sacCer2) (sacCer2). Recently a new yeast genome has appeared as an option
in Galaxy: S. cerevisae str. S288C (Saccharomyces_cerevisiae_S288C_SGD2010). Is
this an update to sacCer2? Where is it coming from? I don't see
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