Re: [galaxy-user] Workflows with parameters

2011-02-01 Thread Dannon Baker
On Jan 31, 2011, at 10:29 PM, Florent Angly wrote: > In a workflow, the only part that is dynamic and configurable by the workflow > user is the input files at the moment. I think it would be nice to allow > setting parameters for some specific workflow steps. For example, say that my > workflow

[galaxy-user] Downloadable Galaxy Virtual Machine in VMware

2011-02-01 Thread Leon Mei
Dear list, Within the Netherlands Bioinformatics Centre, we have implemented a Galaxy VM by wrapping up the distributed version from PennState. We are also adding more easy-to-use pipelines for Genomics and Proteomics data analysis into this server at the moment. You can download the current vers

[galaxy-user] Replicates

2011-02-01 Thread Motallebipour, Mehdi
Hi, I am trying to analyze some RNA-seq data using the Galaxy. The reads for each sample comes from 3 lanes, so I need to integrate these three lane reads to be able to make a comparison between my samples. How do I 'put together' these three read-files? Is there any tools available in Galaxy f

Re: [galaxy-user] Workflows with parameters

2011-02-01 Thread Florent Angly
Hi Dannon, Thanks for your answer. The feature is excellent, and just like I imagined it! I just wonder if there would be a way to make it more obvious for new users, maybe by replacing this small arrow by a small icon that says 'workflow' or 'user'? Regards, Florent On 01/02/11 18:06, Dan

[galaxy-user] 2011 Galaxy Community Conference, May 25-26, Lunteren, The Netherlands

2011-02-01 Thread Dave Clements
Hello all, We are pleased to announce the *2011 Galaxy Community Conference*, being held *May 25-26 in Lunteren, The Netherlands*. The meeting will feature two full days of presentations and discussion on extending Galaxy to use new tools and data sources, deploying Galaxy at your organization, a