Re: [galaxy-user] Reload ".loc" files without restarting the Galaxy server?

Hi Jen, I'd also like to be able to reload *.loc files without having to restart Galaxy. I filed an enhancement bug: https://bitbucket.org/galaxy/galaxy-central/issue/538 Peter On Wed, Apr 20, 2011 at 9:18 PM, Jennifer Jackson wrote: > Hello Luobin, > > At this time, a restart is necessary for

[galaxy-user] Phylogenetic tree viewer ?

Hi, Do you guys know any phylogenetics tree viewer that works well with Galaxy system? Thanks, Luobin ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Pl

[galaxy-user] finding Conserved non coding region

Hi all , I have a set of 1500 sequence obtained from my Chip_Seq experiment. I am interested to Know how many of them are within Conserved non coding Region. My definition of conserved Non coding region is as follows 1. Atleast a 200bp region with 80% conservation between Human , Mice and

[galaxy-user] UCSC->EMBOSS/fuzznuc->UCSC workflow?

Folks, I wanted to scan the 2kb upstream of a list of human gene isoforms for TFBS using fuzznuc. I was able to "Get Data"> "UCSC Main" > "As sequence" and get my sequences "EMBOSS" > fuzznuc ran fine, and output the hits HOWEVER, fuzznuc lost the genomic position information that UCSC has put

[galaxy-user] Calling SNP's

Hi, Is it possible to convert a fasta file to sam/bam format using galaxy. ? OR Is is possible to call SNP's using Blast 2.2.25 (Stand Alone Blast) Thank you Teja ___ The Galaxy User list should be used for the discussion of Galaxy analysi