[galaxy-user] Manipulate FASTQ question

Hi, I currently have read names with the format: @N57638:1:64JU0AAXX:1:1:1057:943 1:Y:0: and would like to change them to the format: @N57638:1:64JU0AAXX:1:1:1057:943/1 I use Manipulate FASTQ, on all reads and set 'Manipulate Reads on:' to 'Name/Identifier', ('String Translate' becomes the only o

[galaxy-user] Galaxy Architecture Documentation

Dear All, I am a software developer, new to Galaxy. Is there a detailed document about the Galaxy code architecture, API, what runners are, and how to write a runner? I am especially interested in integrating Galaxy with an external scheduler software (I am aware of Galaxy's scheduling capab

[galaxy-user] (no subject)

-- Y.P.V.S.Raja Raghava Rao Research Scholar Dr.K.Sreenivasulu Lab Dept.of Animal Sciences School of Life Sciences University of Hyderabad ypvs...@gmail.com 9989733698 ___ The Galaxy User list should be used for the discussion of Galaxy analy

[galaxy-user] Add library to dataset performance metric: developer vs production instances

Hello, Today I was routinely adding a 27GB Illumina lane on my galaxy instance running on a cluster node. Just the regular cloned-from-hg type of instance with set_metadata_externally, no more tuning. It took more than 10 minutes to have the dataset imported into a data library via the filesystem

Re: [galaxy-user] Simulating sequencing and removing redundant sequences

Hi Daniel for 2) you may use the tools under NGS QC and manipulation FASTQ to FASTAconverter followed by Collapsesequences On 19 September 2011 09:54, Kevin