[galaxy-user] Dear Galaxy Developer, where is the "history/workflow" file stored in the local machine?

Dear Galaxy Developer, where is the "history/workflow" file stored in the local machine? Best regards -- Yang Chen Room 635, No.41 Building,320 Yueyang Road Institute of Biochemistry and Cell Biology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences Shanghai,P.R.China Post C

[galaxy-user] Dear Galaxy Developer, where is the "history/workflow" file stored in the local machine?

Dear Galaxy Developer, where is the "history/workflow" file stored in the local machine? I mean the real file store in the disk instead of browser access. Thanks and Best regards -- Yang Chen Room 635, No.41 Building,320 Yueyang Road Institute of Biochemistry and Cell Biology Shanghai Institut

[galaxy-user] Dear Galaxy Developer, where is the "history/workflow" flow stored in the local machine?

Dear Galaxy Developer, where is the "history/workflow" flow stored in the local machine? Best regards -- Yang Chen Room 635, No.41 Building,320 Yueyang Road Institute of Biochemistry and Cell Biology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences Shanghai,P.R.China P

[galaxy-user] Combining two workflows into one

Galaxy Team, I would like to create a workflow by combining portions of two different workflows. How do I do this in Galaxy? Thanks, Getiria Onsongo ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other feat

Re: [galaxy-user] Combining two workflows into one

On Mon, Mar 19, 2012 at 4:53 PM, Innocent Onsongo wrote: > Galaxy Team, > > I would like to create a workflow by combining portions of two > different workflows. How do I do this in Galaxy? > > Thanks, > Getiria Onsongo One outline solution is as follows: (1) Start with an empty history. (2) Upl

Re: [galaxy-user] Combining two workflows into one

You forgot to CC the mailin list. > On Mon, Mar 19, 2012 at 12:02 PM, Peter Cock > wrote: >> On Mon, Mar 19, 2012 at 4:53 PM, Innocent Onsongo wrote: >>> Galaxy Team, >>> >>> I would like to create a workflow by combining portions of two >>> different workflows. How do I do this in Galaxy? >>>

Re: [galaxy-user] Combining two workflows into one

Thanks. I was hoping there was an easier way e.g., selecting the two workflows and exporting them into a workflow canvas. The workflows are not too big so manually creating the workflows will probably be the faster option for now. On Mon, Mar 19, 2012 at 12:09 PM, Peter Cock wrote: > You forgot t

[galaxy-user] Cuffdiff result P and q values

Dear galaxy user After running cuffdiff on my two samples (SAM files from bowtie) i got a list with p and q values, and löast colum is saying abou significance with P value, it seems like the comparison should be significant, but in Q value is 1, and last coumn is saying not significant any one

[galaxy-user] Bowtie Seed length (-l) and non-unique reads mode (m=-1)

Hi there, I have two questions regarding alignment using Bowtie: 1. Is there a way to set the Seed Length (-l) to the full length of each read instead of using a single Seed Length for all reads? 2. When using m = -1 mode (Suppress all alignments for a read if more than n reportable alignments

[galaxy-user] Table with gene count reads

Hi, I was wondering if there is any tool on Galaxy were I can obtain a table with how many reads have been mapped to a given sample and to a given gene (for example, use a Tophat output and use a GFF file to obtain the table). I am using HTSeq to get it (htseq-count). There is also GenomicRanges