[galaxy-user] Batch jobs...

2012-10-26 Thread Neil.Burdett
Hi, I've created a workflow that works well. The workflow accepts 2 input files. After uploading all my input files (there is a lot). How can I batch the process, because I don't want to select files manually and run each job manually. Is there a way to batch this action? Thanks Neil ___

[galaxy-user] Manage Jobs...

2012-10-26 Thread Neil.Burdett
Hi I have a local install of Galaxy running on my desktop. When I'm running a task I expected to see the process under "Admin->Manage Jobs" but it doesn't appear here. Do I need to set something to see the processes here? Neil ___ The G

Re: [galaxy-user] Batch jobs...

2012-10-26 Thread Björn Grüning
Hi Neil, if you run your workflow, there is small little symbol/icon (looks like papers). If you click these ... you can select multiple input files at once. Also you can probably use the Galaxy API for your task [1]. Happy research! Bjoern [1] http://wiki.g2.bx.psu.edu/Learn/API > Hi, >I'v

[galaxy-user] Import files from filesystem path : No redundance?

2012-10-26 Thread julie dubois
Hi all, I have used the option "Import files from filesystem path" to import a complete arborescence of directories and files in one Data Library of Galaxy. Lot of files and sub-directories wil add to this arborescence. I've hoped import those changes in my data library with the option : add datas

Re: [galaxy-user] Import files from filesystem path : No redundance?

2012-10-26 Thread Nate Coraor
On Oct 26, 2012, at 10:32 AM, julie dubois wrote: > Hi all, > I have used the option "Import files from filesystem path" to import a > complete arborescence of directories and files in one Data Library of Galaxy. > > Lot of files and sub-directories wil add to this arborescence. > I've hoped imp

Re: [galaxy-user] Batch jobs...

2012-10-26 Thread Carlos Borroto
On Fri, Oct 26, 2012 at 7:46 AM, Björn Grüning wrote: > Hi Neil, > > if you run your workflow, there is small little symbol/icon (looks like > papers). If you click these ... you can select multiple input files at > once. Also you can probably use the Galaxy API for your task [1]. > Well this wou