[galaxy-user] Problems processing histories existing on galaxy before the changeover

2013-10-10 Thread Elwood Linney
Is anyone who had developed histories on Galaxy online before the changeover getting red error messages after the changeover for tophat or cuffdiff processing? I have now tried a few times to move forward without luck and will remove at least one of my histories and start all over again just in ca

Re: [galaxy-user] Problems processing histories existing on galaxy before the changeover

2013-10-10 Thread Jennifer Jackson
Hi Elwood, Yes, during the change several accounts are known to have experienced jobs that failed. The solution is a re-run. I re-run exact duplicates from one of you histories with failures (one of those sent in as a but report - the Talarazole history, Cuffdiff and Tophat in particular) an

Re: [galaxy-user] Trouble viewing History from a particular laptop

2013-10-10 Thread Jennifer Jackson
Moved to galaxy-...@bx.psu.edu On 10/9/13 2:31 PM, Olivia Choudhury wrote: Hello, I am a graduate student in the University of Notre Dame. I have installed a personal instance of Galaxy and have been developing tools there as a part of my research. Everything worked well on my laptop until

[galaxy-user] Tophat for Illumina - built-in dog genome mislabelled

2013-10-10 Thread Court, Michael
Hi, I minor annoyance that I had found with the current implementation of "Tophat for Illumina (version 1.5.0)" in the public usegalaxy.org site: When you submit sequences for alignment, the dropdown list of available genomes gives 2 dog genome choices - BUT both are labeled the same - "Dog(Can

Re: [galaxy-user] Tophat for Illumina - built-in dog genome mislabelled

2013-10-10 Thread Jennifer Jackson
Hi Michael, Thanks for reporting this, sounds like an older, incorrect, config file is in place. And this can be fixed. I will be going into the genomes area and re-verifying current builds and other built-in data/indexes shortly. Thanks! Jen G